Non-Coding RNA Search

Ss1.1-Pig4-TMW8012D05.5

Sequence:


               
               TCTTCCTGAAGACACACGAATCAAAGCTTTCGACAAGCTCCGTACCTGTTCTTCAGCCAC
CGTGGCTTGGCTAGGTACCCAGGAAAGGAACAAGTTTTGCATCTACAAAAAGGAAGTGGA
TGATAACTACAATGAAGACCAGAAGAAAAGAGAACAAAACCAATGCCTTGGACCAGATAC
AAGGAAGAAATCAGAGAAGGTCCTCTGTAAATATTTCCATAGTCAAAACCTACAAAAAGC
AGTGACCACAGAAACAATTAAAGGTCTTCAGCCTGGAAAATCTTACCTGCTGGATGTTTA
TGTCATCGGACATGGGGGGCACTCTGTGAAGTATCAGAGTAAAGTTGTGAAAACCAGGAA
GTTCTGTTAGTTACCTCAGATAGAGATACAGTTCGTAGAACTCCTAGAGAGACATGCAAT
CACTTTAAGTATAAGCTGACTACTCCCACAGCTGAGAGAAGTTGTGACCTGTATTTGTAC
TATGGAAGGAAGGATATCCACTCATGTATATTGGTGGTTCATATAAGTATTGTTGAAGGA
GACTTGGTCCAGTGAGCCCCGATGGTACCTAGTGTGCATCTGATATCAAAAGATAAAGGA
TATCTTGAATGAATGGACTTCCCTTGCTTTGACCACTGCATGAACTGCTTCTAAATTATT
TATTACCTAAAAGTTTAAAATATGCCATTCATTGCACACAACCACAAATGCAAATCATTC
CTTTCAATAGATGCTAGGATATATATATAAATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCCTGAAGACACACGAATCAAAGCTTTCGACAAGCTCCGTACCTGTTCTTCAGCCAC
CGTGGCTTGGCTAGGTACCCAGGAAAGGAACAAGTTTTGCATCTACAAAAAGGAAGTGGA
TGATAACTACAATGAAGACCAGAAGAAAAGAGAACAAAACCAATGCCTTGGACCAGATAC
AAGGAAGAAATCAGAGAAGGTCCTCTGTAAATATTTCCATAGTCAAAACCTACAAAAAGC
AGTGACCACAGAAACAATTAAAGGTCTTCAGCCTGGAAAATCTTACCTGCTGGATGTTTA
TGTCATCGGACATGGGGGGCACTCTGTGAAGTATCAGAGTAAAGTTGTGAAAACCAGGAA
GTTCTGTTAGTTACCTCAGATAGAGATACAGTTCGTAGAACTCCTAGAGAGACATGCAAT
CACTTTAAGTATAAGCTGACTACTCCCACAGCTGAGAGAAGTTGTGACCTGTATTTGTAC
TATGGAAGGAAGGATATCCACTCATGTATATTGGTGGTTCATATAAGTATTGTTGAAGGA
GACTTGGTCCAGTGAGCCCCGATGGTACCTAGTGTGCATCTGATATCAAAAGATAAAGGA
TATCTTGAATGAATGGACTTCCCTTGCTTTGACCACTGCATGAACTGCTTCTAAATTATT
TATTACCTAAAAGTTTAAAATATGCCATTCATTGCACACAACCACAAATGCAAATCATTC
CTTTCAATAGATGCTAGGATATATATATAAATTATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-319, - strand, RNAz p=0.996295

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-319, - strand, RNAz p=0.996295

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               186-308, - strand, RNAmicro p=0.984169

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               186-308, - strand, RNAmicro p=0.984169

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               1-319, BX102787 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(emb|BX102787.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, BX371941 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|BX371941.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, UI-E-EJ0-ahs-g-11-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM714644.1|), blast E-value=0, identity=94.36% 
               

               
               1-319, 17000455348784 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN259956.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, 17000424508118 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN259957.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, 17000455349444 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN259958.1|), blast E-value=0, identity=94.04%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-319, BX102787 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(emb|BX102787.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, BX371941 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|BX371941.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, UI-E-EJ0-ahs-g-11-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM714644.1|), blast E-value=0, identity=94.36% 
               

               
               1-319, 17000455348784 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN259956.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, 17000424508118 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN259957.1|), blast E-value=0, identity=94.04% 
               

               
               1-319, 17000455349444 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN259958.1|), blast E-value=0, identity=94.04%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-755, gnl|bosTau2|chr6 (1142191-1142957)
               

               
               1-755, gnl|Hg17|chr4 (122315393-122314645)
               

               
               1-755, gnl|Mm7|chr6 (65691829-65692568)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-755, gnl|bosTau2|chr6 (1142191-1142957)
               

               
               1-755, gnl|Hg17|chr4 (122315393-122314645)
               

               
               1-755, gnl|Mm7|chr6 (65691829-65692568)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               liv (0.292569)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)

	1-319, BX102787 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone (emb\|BX102787.1\|), blast E-value=0, identity=94.04%
	1-319, BX371941 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb\|BX371941.1\|), blast E-value=0, identity=94.04%
	1-319, UI-E-EJ0-ahs-g-11-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM714644.1\|), blast E-value=0, identity=94.36%
	1-319, 17000455348784 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN259956.1\|), blast E-value=0, identity=94.04%
	1-319, 17000424508118 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN259957.1\|), blast E-value=0, identity=94.04%
	1-319, 17000455349444 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN259958.1\|), blast E-value=0, identity=94.04%

	1-755, gnl\|bosTau2\|chr6 (1142191-1142957)
	1-755, gnl\|Hg17\|chr4 (122315393-122314645)
	1-755, gnl\|Mm7\|chr6 (65691829-65692568)