Non-Coding RNA Search

Ss1.1-Pig4-TMW8012D18.5

Sequence:


               
               TTGTGTTATTTCAGCCATAGTTTGGTTATTTTATTGGACAGTTTCAAATTTCCCATGTCC
TGGGAACCCAGTCAGGCAAGAAATAATTGGTACCAATAAATTTTATAATGGAAAAAATTA
GAAGTCAAAATCTTAGGAGTTACTAATTATAAAGGACAAGGAAGGAGAGATTCTGAATTG
TTAGTGATGCTAAACCTATAACGGGACGGACTTCTTGCTCTGTTGGAAAGGCTTGGTGCC
TGGAAGATTACCCTAGGTCCAGCTTCTTATGGTGGTTTACCACACATACTTTATTGCTCT
TCTCTGGTTTTGTGTCCCTTATGGAAAATTGTGATTTGGGGACCCATAGGATTTAAAAGT
AGTGATTGATGGAGAAGAGACCCTAGGTCTTGATGGCTCTTATCAGGTAGTTAACATGGA
TGAAGGATGTGGCCTCTTCTCTTATGTTCTCCATGCCTAGGACTTCCTCCATCAGGCAGC
TGGCAGGACCTGAAAGATCACATGCGAGAAGCTGGGGACGTCTGTTACGCGGATGTACAG
AAAGATGGAATGGGGATGGTTGAATATCTCAGAAAAGAAGACATGGAATATGCCCTGCGT
AAACTGGCTGACACCAAATTCCGCTCTCATGAGGTGGGTCCCCACCTTCTGTTGAGCTTG
TACTCAGATCACTCCACCTAAAGCTGACCTTGACAAAGTAGCAACAGGCCATGCATTTAC
CATTTGATGTCTTCACAGTATCACTAAAGATGTTTTTGTTGTTGTTGTCTTTTTAGGGCT
GCAGTGATGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGTTATTTCAGCCATAGTTTGGTTATTTTATTGGACAGTTTCAAATTTCCCATGTCC
TGGGAACCCAGTCAGGCAAGAAATAATTGGTACCAATAAATTTTATAATGGAAAAAATTA
GAAGTCAAAATCTTAGGAGTTACTAATTATAAAGGACAAGGAAGGAGAGATTCTGAATTG
TTAGTGATGCTAAACCTATAACGGGACGGACTTCTTGCTCTGTTGGAAAGGCTTGGTGCC
TGGAAGATTACCCTAGGTCCAGCTTCTTATGGTGGTTTACCACACATACTTTATTGCTCT
TCTCTGGTTTTGTGTCCCTTATGGAAAATTGTGATTTGGGGACCCATAGGATTTAAAAGT
AGTGATTGATGGAGAAGAGACCCTAGGTCTTGATGGCTCTTATCAGGTAGTTAACATGGA
TGAAGGATGTGGCCTCTTCTCTTATGTTCTCCATGCCTAGGACTTCCTCCATCAGGCAGC
TGGCAGGACCTGAAAGATCACATGCGAGAAGCTGGGGACGTCTGTTACGCGGATGTACAG
AAAGATGGAATGGGGATGGTTGAATATCTCAGAAAAGAAGACATGGAATATGCCCTGCGT
AAACTGGCTGACACCAAATTCCGCTCTCATGAGGTGGGTCCCCACCTTCTGTTGAGCTTG
TACTCAGATCACTCCACCTAAAGCTGACCTTGACAAAGTAGCAACAGGCCATGCATTTAC
CATTTGATGTCTTCACAGTATCACTAAAGATGTTTTTGTTGTTGTTGTCTTTTTAGGGCT
GCAGTGATGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56966827|pdb|1WG4|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56966827|pdb|1WG4|A

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-750, gnl|bosTau2|chr17 (14811198-14810461)
               

               
               1-750, gnl|Hg17|chr12 (119365107-119364359)
               

               
               1-750, gnl|Mm7|chr5 (114552517-114553212)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-750, gnl|bosTau2|chr17 (14811198-14810461)
               

               
               1-750, gnl|Hg17|chr12 (119365107-119364359)
               

               
               1-750, gnl|Mm7|chr5 (114552517-114553212)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               cmu (0.186393)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cmu (0.186393)

	1-750, gnl\|bosTau2\|chr17 (14811198-14810461)
	1-750, gnl\|Hg17\|chr12 (119365107-119364359)
	1-750, gnl\|Mm7\|chr5 (114552517-114553212)