Ss1.1-Pig4-TMW8012E01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCATTATTGCTCGATCTTGCACTCAGGTTGACAGGTCAGAAACCGTGGATGATGAAAAC AATAACTCGTCTTCACAAAGCTATGGTGTTGCTTGAATATTTCACAAGTAATTCTTGGGT TTGGAGTACTGACAATGTCAATATGTTAATGAACCAACTGAACCCTGAAGATAAAAAAAC CTTTAATATTGATGTACGGCAGTTACATTGGGCGGAATACATAGAGAACTACTGTATGGG AACTAAGAAGTATGTATTGAATGAAGAAATGTCTGGCCTTCCTGCAGCTAGAAAACATCT GAACAAGTTGAGGAACATACGTTACGGTTTCAATACTATCCTTGTGATCCTGATTTGGCG CATTTTTATTGCAAGATCACAAATGGCAAGAAACATCTGGTACTTTGTGGTTAGTCTGTG TTACAAGTTTCTGTCTTACTTCCGAGCATCCAGCACTATGAGATACTGAAGACAAGAATT TAGCATTAGAACATCTATGCATATAGTGGTCTAAATGCACAAAATGTAAAATGTACTTAA GTCATCTCACCTTTTGTCAAGACATTAAACCATCTTAGATCAGAGTGTGGAGTAAATTAC GGTCCATTTTATGTAACGTTTCAATGTTTATGCTCATAAAAGCCTAGTGAATATGCTGTG GTATGCCAGCTCAGATCTACAGTAGCCGCCAAAACCATGGCTTAACATTTAGATCCCTAA AGAAAAGGGGTGGGGTGAGAGTAGGAGTAGGGAATAGGAACACTGACCAGTATAACTGTG CAACTCTGGAACATATTAATTAATTAAAATATGCCTTAACATATAGTGATTTTCTAATTG TGATATTTAGTGCAGTGAAATGCATTTATTTGGACAGGAATACCAGCTAACTTGATAGAT AATTGATTCTTCAGTGTTTGATTTTTTTAATCAGTTGAAGTGGGTTTTATTTTCATTAAT ATTACAGCCAATGTTTTCACATCATCTGCTAAGTTATTGAGTGTCTCAAACAGGAAAGAC ATGTTTTCATTTTTATTTCTCTGATTAGAGGTCTGATGCATATCGTTTTTCTATAAGCAA TCAGTTGCTTTCATAATCAAAAGGCCATGTATTGTTAGAGGCCCTACTGGATCTAAATGA TTTTGAGACTCCATATCAACATATGCTATGTGTTTTTAGAAGGAAAATGAAAATTCAGGT GAGACTGTTAGTATCAGAAAGAATAGGAATACATTCTTCTTGACCACATTGTGACCAAAT AAAAATTAGTCCTGTGACATTTTGTTCATGTTTCGAAGCTGGTTGATTACTTGAGACTTT GATCAACAGGTGCAGGTGCAGGGAGGAATTCACCCTACTTGCGCTCTCCTCCCTTTATAA ATTTTATTAATAGGACTTTAAAAGGCTTATACTGTCTTTCTAATGAAAACTGAAAGTGTT ATTATGGAAGAATGTATTTGCAGGTAGTCCTAACATTAAGAAAATGTTCTTATATGTGTG TAAACACATACTAACTTTTGACCTTGAGAGCTGAATTTTCAAGAAAAATAAAATAATGCA TAGAATAATGTGTATAAAATTAAATAAAGAACTTTATTTACATACCACATAAAGTAGCAA ACTGTTGAATGAATTTGAAGATACCATTTATTTTTTTCTGCATGTGGTTTTAGCTTTTAG AAAGAAGTGCATTATAGAAACAAGTAATAGCAAGAAAATTAATGTATATTTTAATGATAC ATTATAATTCCCGTTAAATCTAAGAGTACCTAACTCTCCTTACTGTTTTAACATGCATTT GGTTTAACAGATCAGTAACATGTTCTGATTTAGCTGATCAAATTGTATATGTTTAAACAA TTAACAGTGTATCTTGAATATGTTTAATGAAGTCAGTTCACAATACAAAAAGTTACATAG AACTTTACATCTTAAATTTCTTTGTCAATTTAAATGCAATGTAAAGGTTTATTTTGTTAT TGTGAAGAAAATTAAATGTAAAGAAAATCACCTTCTTCCATGCAGGTGTATAATCTTGAA AAGGAAAATGCTTCTGTGTTGAAGCCAGATTTTCTGTAGTAAAACTTTTAAAACATTATT TTAAAAGAAGTATGTATATAAATATATATGTGTGTGTGTATATATATATTCTTTGGAATG ATACTAAAGTCTCTGGTCTAGGACCATGCCTTGTATAAGGTGTGAGAGACCATGGCAGTG TCTAAAAATGGAATAAATGATGATGCCTTTGATTTAAAATGGCCCACATAATTAACTCTA GACACTCTATACTTTGAGTACTCCATCTCTCCAAATACATTTCCCTAATGTGCTGAAAGC TAGTTAACATTTTTATGATTTTTATACATCTGCCAGACATACTTCATCAGGCCTGTGAAG TACATGGGAGGTCTACTTTGTCATTGTTCTTGTAATCTATCTTAAATGCTAACTGGGAGG GTGCTGAGACCACTGCATTAATTTTGTGTGTTAAGAATTCTTTTGCAAAGAAAGCTAATG AATGAATTAATATGTCATTCTGGAATTTAAAGTTCAAAAATTAGTATAAAAAAATATTTG GGTTGTTAATCCTCACCAACTAGTCTTTAAGCCTAATTCAAATATAAAGATTTTGGAAAT CATTTCTATTTATGTCATTTGCCCGACATGATTTTTAGTTCTTTTGGATTATATTTTATG CACAAACTCAAATTTTAACAGGATAGCCTATTAAAGTAATATTTCACTTAACTCATAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCATTATTGCTCGATCTTGCACTCAGGTTGACAGGTCAGAAACCGTGGATGATGAAAAC AATAACTCGTCTTCACAAAGCTATGGTGTTGCTTGAATATTTCACAAGTAATTCTTGGGT TTGGAGTACTGACAATGTCAATATGTTAATGAACCAACTGAACCCTGAAGATAAAAAAAC CTTTAATATTGATGTACGGCAGTTACATTGGGCGGAATACATAGAGAACTACTGTATGGG AACTAAGAAGTATGTATTGAATGAAGAAATGTCTGGCCTTCCTGCAGCTAGAAAACATCT GAACAAGTTGAGGAACATACGTTACGGTTTCAATACTATCCTTGTGATCCTGATTTGGCG CATTTTTATTGCAAGATCACAAATGGCAAGAAACATCTGGTACTTTGTGGTTAGTCTGTG TTACAAGTTTCTGTCTTACTTCCGAGCATCCAGCACTATGAGATACTGAAGACAAGAATT TAGCATTAGAACATCTATGCATATAGTGGTCTAAATGCACAAAATGTAAAATGTACTTAA GTCATCTCACCTTTTGTCAAGACATTAAACCATCTTAGATCAGAGTGTGGAGTAAATTAC GGTCCATTTTATGTAACGTTTCAATGTTTATGCTCATAAAAGCCTAGTGAATATGCTGTG GTATGCCAGCTCAGATCTACAGTAGCCGCCAAAACCATGGCTTAACATTTAGATCCCTAA AGAAAAGGGGTGGGGTGAGAGTAGGAGTAGGGAATAGGAACACTGACCAGTATAACTGTG CAACTCTGGAACATATTAATTAATTAAAATATGCCTTAACATATAGTGATTTTCTAATTG TGATATTTAGTGCAGTGAAATGCATTTATTTGGACAGGAATACCAGCTAACTTGATAGAT AATTGATTCTTCAGTGTTTGATTTTTTTAATCAGTTGAAGTGGGTTTTATTTTCATTAAT ATTACAGCCAATGTTTTCACATCATCTGCTAAGTTATTGAGTGTCTCAAACAGGAAAGAC ATGTTTTCATTTTTATTTCTCTGATTAGAGGTCTGATGCATATCGTTTTTCTATAAGCAA TCAGTTGCTTTCATAATCAAAAGGCCATGTATTGTTAGAGGCCCTACTGGATCTAAATGA TTTTGAGACTCCATATCAACATATGCTATGTGTTTTTAGAAGGAAAATGAAAATTCAGGT GAGACTGTTAGTATCAGAAAGAATAGGAATACATTCTTCTTGACCACATTGTGACCAAAT AAAAATTAGTCCTGTGACATTTTGTTCATGTTTCGAAGCTGGTTGATTACTTGAGACTTT GATCAACAGGTGCAGGTGCAGGGAGGAATTCACCCTACTTGCGCTCTCCTCCCTTTATAA ATTTTATTAATAGGACTTTAAAAGGCTTATACTGTCTTTCTAATGAAAACTGAAAGTGTT ATTATGGAAGAATGTATTTGCAGGTAGTCCTAACATTAAGAAAATGTTCTTATATGTGTG TAAACACATACTAACTTTTGACCTTGAGAGCTGAATTTTCAAGAAAAATAAAATAATGCA TAGAATAATGTGTATAAAATTAAATAAAGAACTTTATTTACATACCACATAAAGTAGCAA ACTGTTGAATGAATTTGAAGATACCATTTATTTTTTTCTGCATGTGGTTTTAGCTTTTAG AAAGAAGTGCATTATAGAAACAAGTAATAGCAAGAAAATTAATGTATATTTTAATGATAC ATTATAATTCCCGTTAAATCTAAGAGTACCTAACTCTCCTTACTGTTTTAACATGCATTT GGTTTAACAGATCAGTAACATGTTCTGATTTAGCTGATCAAATTGTATATGTTTAAACAA TTAACAGTGTATCTTGAATATGTTTAATGAAGTCAGTTCACAATACAAAAAGTTACATAG AACTTTACATCTTAAATTTCTTTGTCAATTTAAATGCAATGTAAAGGTTTATTTTGTTAT TGTGAAGAAAATTAAATGTAAAGAAAATCACCTTCTTCCATGCAGGTGTATAATCTTGAA AAGGAAAATGCTTCTGTGTTGAAGCCAGATTTTCTGTAGTAAAACTTTTAAAACATTATT TTAAAAGAAGTATGTATATAAATATATATGTGTGTGTGTATATATATATTCTTTGGAATG ATACTAAAGTCTCTGGTCTAGGACCATGCCTTGTATAAGGTGTGAGAGACCATGGCAGTG TCTAAAAATGGAATAAATGATGATGCCTTTGATTTAAAATGGCCCACATAATTAACTCTA GACACTCTATACTTTGAGTACTCCATCTCTCCAAATACATTTCCCTAATGTGCTGAAAGC TAGTTAACATTTTTATGATTTTTATACATCTGCCAGACATACTTCATCAGGCCTGTGAAG TACATGGGAGGTCTACTTTGTCATTGTTCTTGTAATCTATCTTAAATGCTAACTGGGAGG GTGCTGAGACCACTGCATTAATTTTGTGTGTTAAGAATTCTTTTGCAAAGAAAGCTAATG AATGAATTAATATGTCATTCTGGAATTTAAAGTTCAAAAATTAGTATAAAAAAATATTTG GGTTGTTAATCCTCACCAACTAGTCTTTAAGCCTAATTCAAATATAAAGATTTTGGAAAT CATTTCTATTTATGTCATTTGCCCGACATGATTTTTAGTTCTTTTGGATTATATTTTATG CACAAACTCAAATTTTAACAGGATAGCCTATTAAAGTAATATTTCACTTAACTCATAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 48-2286, - strand, RNAz p=0.977975 | |
| 423-621, - strand, RNAz p=0.883167 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 48-2286, - strand, RNAz p=0.977975 | |
| 423-621, - strand, RNAz p=0.883167 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 48-177, gnl|bosTau2|chr15 (25268253-25268382) | |
| 48-177, gnl|canFam2|chr21 (39767385-39767514) | |
| 48-177, gnl|canFam2|chr21 (39767372-39767516) | |
| 48-177, gnl|danRer3|chr9 (10363620-10363491) | |
| 48-177, gnl|danRer3|chr9 (10363625-10363486) | |
| 48-177, gnl|echTel1|scaffold_324552 (100722-100602) | |
| 48-177, gnl|echTel1|scaffold_324552 (100744-100600) | |
| 48-177, gnl|fr1|chrUn (112987724-112987595) | |
| 48-177, gnl|fr1|chrUn (112987737-112987590) | |
| 48-177, gnl|galGal2|chr5 (4985653-4985533) | |
| 48-177, gnl|galGal2|chr5 (4985675-4985531) | |
| 48-177, gnl|hg17|chr11 (13699839-13699986) | |
| 48-177, gnl|Hg17|chr11 (13699852-13699981) | |
| 48-177, gnl|hg17|chr13 (89621744-89621873) | |
| 48-177, gnl|loxAfr1|scaffold_40453 (361-481) | |
| 48-177, gnl|loxAfr1|scaffold_40453 (339-483) | |
| 48-177, gnl|mm7|chr7 (109477402-109477531) | |
| 48-177, gnl|mm7|chr7 (109477389-109477533) | |
| 48-177, gnl|Mm7|chr7 (109477402-109477531) | |
| 48-177, gnl|monDom2|scaffold_10 (64566249-64566378) | |
| 48-177, gnl|monDom2|scaffold_10 (64566236-64566380) | |
| 48-177, gnl|oryCun1|scaffold_169050 (11783-11654) | |
| 48-177, gnl|oryCun1|scaffold_169050 (11796-11652) | |
| 48-177, gnl|panTro1|chr14 (72576062-72576191) | |
| 48-177, gnl|panTro1|chr9 (13913218-13913365) | |
| 48-177, gnl|rheMac2|chr14 (58164391-58164244) | |
| 48-177, gnl|rheMac2|chr17 (70697850-70697978) | |
| 48-177, gnl|rn3|chr1 (171551664-171551793) | |
| 48-177, gnl|rn3|chr1 (171551651-171551795) | |
| 48-177, gnl|tetNig1|chr19 (1444482-1444611) | |
| 48-177, gnl|tetNig1|chr19 (1444481-1444614) | |
| 48-177, gnl|xenTro1|scaffold_552 (143964-144072) | |
| 48-177, gnl|xenTro1|scaffold_552 (143943-144074) | |
| 304-2384, gnl|bosTau2|chr15 (25272275-25274340) | |
| 304-2384, gnl|Hg17|chr11 (13706732-13708770) | |
| 304-2384, gnl|Mm7|chr7 (109484119-109486067) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-177, gnl|bosTau2|chr15 (25268253-25268382) | |
| 48-177, gnl|canFam2|chr21 (39767385-39767514) | |
| 48-177, gnl|canFam2|chr21 (39767372-39767516) | |
| 48-177, gnl|danRer3|chr9 (10363620-10363491) | |
| 48-177, gnl|danRer3|chr9 (10363625-10363486) | |
| 48-177, gnl|echTel1|scaffold_324552 (100722-100602) | |
| 48-177, gnl|echTel1|scaffold_324552 (100744-100600) | |
| 48-177, gnl|fr1|chrUn (112987724-112987595) | |
| 48-177, gnl|fr1|chrUn (112987737-112987590) | |
| 48-177, gnl|galGal2|chr5 (4985653-4985533) | |
| 48-177, gnl|galGal2|chr5 (4985675-4985531) | |
| 48-177, gnl|hg17|chr11 (13699839-13699986) | |
| 48-177, gnl|Hg17|chr11 (13699852-13699981) | |
| 48-177, gnl|hg17|chr13 (89621744-89621873) | |
| 48-177, gnl|loxAfr1|scaffold_40453 (361-481) | |
| 48-177, gnl|loxAfr1|scaffold_40453 (339-483) | |
| 48-177, gnl|mm7|chr7 (109477402-109477531) | |
| 48-177, gnl|mm7|chr7 (109477389-109477533) | |
| 48-177, gnl|Mm7|chr7 (109477402-109477531) | |
| 48-177, gnl|monDom2|scaffold_10 (64566249-64566378) | |
| 48-177, gnl|monDom2|scaffold_10 (64566236-64566380) | |
| 48-177, gnl|oryCun1|scaffold_169050 (11783-11654) | |
| 48-177, gnl|oryCun1|scaffold_169050 (11796-11652) | |
| 48-177, gnl|panTro1|chr14 (72576062-72576191) | |
| 48-177, gnl|panTro1|chr9 (13913218-13913365) | |
| 48-177, gnl|rheMac2|chr14 (58164391-58164244) | |
| 48-177, gnl|rheMac2|chr17 (70697850-70697978) | |
| 48-177, gnl|rn3|chr1 (171551664-171551793) | |
| 48-177, gnl|rn3|chr1 (171551651-171551795) | |
| 48-177, gnl|tetNig1|chr19 (1444482-1444611) | |
| 48-177, gnl|tetNig1|chr19 (1444481-1444614) | |
| 48-177, gnl|xenTro1|scaffold_552 (143964-144072) | |
| 48-177, gnl|xenTro1|scaffold_552 (143943-144074) | |
| 304-2384, gnl|bosTau2|chr15 (25272275-25274340) | |
| 304-2384, gnl|Hg17|chr11 (13706732-13708770) | |
| 304-2384, gnl|Mm7|chr7 (109484119-109486067) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| spl (0.429553) | |
| tes (0.415628) | |
| kid (0.389206) | |
| elu (0.385356) | |
| cbl (0.344392) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cte (0.29274) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ebs (0.118301) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.429553) | |
| tes (0.415628) | |
| kid (0.389206) | |
| elu (0.385356) | |
| cbl (0.344392) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cte (0.29274) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ebs (0.118301) |