Non-Coding RNA Search

Ss1.1-Pig4-TMW8012F01.3

Sequence:


               
               CAGCCATTTGGAACATTCGCCCTGGACCCTGGAGTAGAAGTGGGTTTGCCCCTGCCAACC
GGTTAGGTTAGAAGGTTAGACGTGCAGACACTCCAGGCTCCATCCCACCACCCGCAGGAG
AATGTGCATTTTAACGAGGTTAGAAGCTGGGGTGGGTGGGGTGGGTGTGTCTGCTTAGGA
CAGTTTGAGGAGAGTGGTTCCAGGCAGCTTCCAACTTTCTGGAACAGATTAACCATGGAT
CAGTAAGAAGTAGCAGCCAAGACAGGCCTTATCTTGTCAACAAACTGAGGAATTTTCATC
GAATAAGTTTGCTTTCTGATAGAAAAGCCGAGGTACACACCTTTAGACCGTTGCCACACA
GGGTATTTTGTTCAAGTAAGCTAAGAATGAAATGCTTCACGCTTCAGTGTATGGAAAAAT
CTGTCATGTATGTGTAGCTTTTGTAATGCAAAGGTTTTCCTCTACAATTTTGTAAACTCA
GCATATTTGTACAGTTATTTATTTATTGGAGATAAACTAGAACACAGGCAAAACACTTGC
TTATGACGTCACATGTAGAAAATAAACAAATAACAGCTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCATTTGGAACATTCGCCCTGGACCCTGGAGTAGAAGTGGGTTTGCCCCTGCCAACC
GGTTAGGTTAGAAGGTTAGACGTGCAGACACTCCAGGCTCCATCCCACCACCCGCAGGAG
AATGTGCATTTTAACGAGGTTAGAAGCTGGGGTGGGTGGGGTGGGTGTGTCTGCTTAGGA
CAGTTTGAGGAGAGTGGTTCCAGGCAGCTTCCAACTTTCTGGAACAGATTAACCATGGAT
CAGTAAGAAGTAGCAGCCAAGACAGGCCTTATCTTGTCAACAAACTGAGGAATTTTCATC
GAATAAGTTTGCTTTCTGATAGAAAAGCCGAGGTACACACCTTTAGACCGTTGCCACACA
GGGTATTTTGTTCAAGTAAGCTAAGAATGAAATGCTTCACGCTTCAGTGTATGGAAAAAT
CTGTCATGTATGTGTAGCTTTTGTAATGCAAAGGTTTTCCTCTACAATTTTGTAAACTCA
GCATATTTGTACAGTTATTTATTTATTGGAGATAAACTAGAACACAGGCAAAACACTTGC
TTATGACGTCACATGTAGAAAATAAACAAATAACAGCTAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               94-569, gnl|bosTau2|chr13 (27460876-27460416)
               

               
               94-569, gnl|Hg17|chr20 (22975111-22974642)
               

               
               94-569, gnl|Mm7|chr2 (148145818-148145338)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-569, gnl|bosTau2|chr13 (27460876-27460416)
               

               
               94-569, gnl|Hg17|chr20 (22975111-22974642)
               

               
               94-569, gnl|Mm7|chr2 (148145818-148145338)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               cmu (0.372787)
               

               
               csk (0.281492)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cmu (0.372787)
               

               
               csk (0.281492)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	94-569, gnl\|bosTau2\|chr13 (27460876-27460416)
	94-569, gnl\|Hg17\|chr20 (22975111-22974642)
	94-569, gnl\|Mm7\|chr2 (148145818-148145338)

	pro (0.512033)
	cmu (0.372787)
	csk (0.281492)
	spc (0.226732)
	aor (0.195274)
	mga (0.160205)
	bfe (0.149858)
	cst (0.140036)
	che (0.136314)
	bla (0.124347)
	eru (0.120048)