Non-Coding RNA Search

Ss1.1-Pig4-TMW8012G15.5

Sequence:


               
               CAGAGGCCAAGAAGAATAAGAGAGAAAGGAAAGAAGAAAGGCAGCAGAAGAACAGGAAAA
AAGAAAAGAAAGAACTAAAACTGGAAAACCACCAAGAGAACTCGAAGAGTCAGAAGCCTA
AAAAGCGCAAGAAGGAGCCAGAGGCCGAAGGGGAGGAGGCCCTGGAGGCCCCCGGCTGCG
CGGGGAAGAAGAGCCGGAAGAAGAGGAGCAAGGCCGAGCGCGCCCAGGAGGCGGATGGAG
CCACTGAGGACCAGGAGAGGACGGCAGAAACCGGTCCAGGGAAAAGAAAGCGGAAGGATC
TGGAAGTTGAAGCAGATTCTAAGAAGAAGAAGATGAAGCTCCCAGGACATTGTGAGGGTG
GAGAAGCGGAAAACCATGAGGCTCCTGCAAAAGGTAAATTCAACTGGAAGGGAACCATTA
AAGCAGTTCTGAAACAGGCCCCAGACAACGAAATAACAGTCAAAAAGCTAAGGAAAAAGG
TTTTAGCGCAGTATTACGCTGTGACCAAGGAGCACCACCAGTCTGAAGAGGAACTCCTGG
TCATCTTCAACAGGAAAATCAGCAAGAACCCCACCTTGAAGTTGCTAAAGGATAAGGTCA
AGCTTTTAAAATGAACTTTTTTTATATCTAAAAATCGAACCCATTCTGCCGATCTCTTCC
TTTCATGACTGCTTGTAAAACATGTAATGAATTAAAACAACTCAATTTCGCTTTCCAAAG
CTGTATTTTTAAGTTAAGAAAAAATATATATTTTTGGTAGAACTTATATGAGAAAATAAA
ATATATTCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGCCAAGAAGAATAAGAGAGAAAGGAAAGAAGAAAGGCAGCAGAAGAACAGGAAAA
AAGAAAAGAAAGAACTAAAACTGGAAAACCACCAAGAGAACTCGAAGAGTCAGAAGCCTA
AAAAGCGCAAGAAGGAGCCAGAGGCCGAAGGGGAGGAGGCCCTGGAGGCCCCCGGCTGCG
CGGGGAAGAAGAGCCGGAAGAAGAGGAGCAAGGCCGAGCGCGCCCAGGAGGCGGATGGAG
CCACTGAGGACCAGGAGAGGACGGCAGAAACCGGTCCAGGGAAAAGAAAGCGGAAGGATC
TGGAAGTTGAAGCAGATTCTAAGAAGAAGAAGATGAAGCTCCCAGGACATTGTGAGGGTG
GAGAAGCGGAAAACCATGAGGCTCCTGCAAAAGGTAAATTCAACTGGAAGGGAACCATTA
AAGCAGTTCTGAAACAGGCCCCAGACAACGAAATAACAGTCAAAAAGCTAAGGAAAAAGG
TTTTAGCGCAGTATTACGCTGTGACCAAGGAGCACCACCAGTCTGAAGAGGAACTCCTGG
TCATCTTCAACAGGAAAATCAGCAAGAACCCCACCTTGAAGTTGCTAAAGGATAAGGTCA
AGCTTTTAAAATGAACTTTTTTTATATCTAAAAATCGAACCCATTCTGCCGATCTCTTCC
TTTCATGACTGCTTGTAAAACATGTAATGAATTAAAACAACTCAATTTCGCTTTCCAAAG
CTGTATTTTTAAGTTAAGAAAAAATATATATTTTTGGTAGAACTTATATGAGAAAATAAA
ATATATTCTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6QAQ9_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6QAQ9_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               477-595, - strand, RNAz p=0.711616

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-595, - strand, RNAz p=0.711616

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-308, gnl|bosTau2|chr6 (59978495-59978794)
               

               
               1-308, gnl|Hg17|chr4 (4394453-4394163)
               

               
               1-308, gnl|Mm7|chr5 (37312063-37312389)
               


               
               477-790, gnl|bosTau2|chr6 (59983514-59983827)
               

               
               477-790, gnl|Hg17|chr4 (4387825-4387515)
               

               
               477-790, gnl|Mm7|chr5 (37315384-37315689)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr6 (59978495-59978794)
               

               
               1-308, gnl|Hg17|chr4 (4394453-4394163)
               

               
               1-308, gnl|Mm7|chr5 (37312063-37312389)
               


               
               477-790, gnl|bosTau2|chr6 (59983514-59983827)
               

               
               477-790, gnl|Hg17|chr4 (4387825-4387515)
               

               
               477-790, gnl|Mm7|chr5 (37315384-37315689)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (1.03907)
               

               
               ova (0.258264)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               ova (0.258264)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	1-308, gnl\|bosTau2\|chr6 (59978495-59978794)
	1-308, gnl\|Hg17\|chr4 (4394453-4394163)
	1-308, gnl\|Mm7\|chr5 (37312063-37312389)

	477-790, gnl\|bosTau2\|chr6 (59983514-59983827)
	477-790, gnl\|Hg17\|chr4 (4387825-4387515)
	477-790, gnl\|Mm7\|chr5 (37315384-37315689)

	tes (1.03907)
	ova (0.258264)
	nlu (0.191681)
	fty (0.17584)
	mcp (0.170648)
	thg (0.126791)
	ecc (0.115035)