Non-Coding RNA Search

Ss1.1-Pig4-TMW8012G22.3

Sequence:


               
               TTGAATAGTCATTAAGGGGATACTGCATTTTTAAAAACGAGTGTACTAGTTGAGCTTCCC
AATAATAAGCACTGTATTATATCCTTTCATCAGCGCTCTCATTTGATCTTAAAAACCCCA
TGAAATAAAGATTTTATTTTTTTGATTTTTAGGGCTGCAACCTGAAGCATATGGAGATTC
CCAGACTAGAGGTCTAATAGGAGCTGTGGCTGCTGGCCTACACCACAGCCACAGCAACGC
CAGATGCTTAACCCACTGAGCAAGGCCAGGGATCCAATCCGCAACCTCATGGTTCCTAGT
CAGATTCATTTCCGCTGTGCCATGTCAGGAACTCCAAGAATTTTTTTGGTGATTAAAGTT
TTTCAACTGTAAAATATATACTAGTTATAGGAAGCCAAGATTGTTTGCATTGCTAGTAAT
TCCTAGTCTAGATACCGACTTGGAATGAATGTCTGACTCCTAAGACCAAGGTTATGCCCT
AGTTTCCTTTTCCTGCCTTTTCCGTCGTCTTGTCTCCTGCCCATTCCCTCCTCTGTTCTA
CCATTTCTCCATCTCATCTCAAGGCTCTGGTTCAGTGTCCCGCCATACCACCCTGAACAC
GCCTAATCTCCTCATGCCTTTGGTTTCAGCTATGAATTGGTGCCTACTTCAGATGTGAAT
TAATGATGACTTAAAATACTACATTTTTGCAAATAAAACTGAGAGCTGCCTAAGGGCAAG
AATACATTGTTTTATTCAGCTTGGGATTTCCCCCAGTACCTAGAATGGATTCTAATATAG
AGCAAATGGAGATTAATAAATGTGTAAATGAATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAATAGTCATTAAGGGGATACTGCATTTTTAAAAACGAGTGTACTAGTTGAGCTTCCC
AATAATAAGCACTGTATTATATCCTTTCATCAGCGCTCTCATTTGATCTTAAAAACCCCA
TGAAATAAAGATTTTATTTTTTTGATTTTTAGGGCTGCAACCTGAAGCATATGGAGATTC
CCAGACTAGAGGTCTAATAGGAGCTGTGGCTGCTGGCCTACACCACAGCCACAGCAACGC
CAGATGCTTAACCCACTGAGCAAGGCCAGGGATCCAATCCGCAACCTCATGGTTCCTAGT
CAGATTCATTTCCGCTGTGCCATGTCAGGAACTCCAAGAATTTTTTTGGTGATTAAAGTT
TTTCAACTGTAAAATATATACTAGTTATAGGAAGCCAAGATTGTTTGCATTGCTAGTAAT
TCCTAGTCTAGATACCGACTTGGAATGAATGTCTGACTCCTAAGACCAAGGTTATGCCCT
AGTTTCCTTTTCCTGCCTTTTCCGTCGTCTTGTCTCCTGCCCATTCCCTCCTCTGTTCTA
CCATTTCTCCATCTCATCTCAAGGCTCTGGTTCAGTGTCCCGCCATACCACCCTGAACAC
GCCTAATCTCCTCATGCCTTTGGTTTCAGCTATGAATTGGTGCCTACTTCAGATGTGAAT
TAATGATGACTTAAAATACTACATTTTTGCAAATAAAACTGAGAGCTGCCTAAGGGCAAG
AATACATTGTTTTATTCAGCTTGGGATTTCCCCCAGTACCTAGAATGGATTCTAATATAG
AGCAAATGGAGATTAATAAATGTGTAAATGAATGAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               616-813, gnl|bosTau2|chr25 (22153111-22153313)
               

               
               616-813, gnl|Mm7|chr4 (10976734-10976547)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               616-813, gnl|bosTau2|chr25 (22153111-22153313)
               

               
               616-813, gnl|Mm7|chr4 (10976734-10976547)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               hea (0.204499)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	616-813, gnl\|bosTau2\|chr25 (22153111-22153313)
	616-813, gnl\|Mm7\|chr4 (10976734-10976547)

	hea (0.204499)
	pty (0.142714)
	lnt (0.142308)
	ute (0.132784)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)