Non-Coding RNA Search

Ss1.1-Pig4-TMW8012H20.5

Sequence:


               
               GCGTGAAGATGGCAGCGGTTGAAGAAGAGCCAAAGCCCAAAAAGCTGAAGGTGGAGGCGC
TGCGAACGCTGAGTGAAAATATTCTCTTTGGAATGGGAAATCCTCTTCTTGACATCAGTG
CTGTAGTGGATAAGGATTTCCTTGATAAGTATTCTCTTAAACCAAATGACCAAATCTTGG
CTGAAGACAAACATAAGGAACTGTTTGATGAACTTGTAAAAAAATTCAAAGTTGAATATC
ATGCTGGTGGCTCTACCCAGAATTCAATTAAAGTGGCTCAGTGGATGATTCAGCAGCCAC
ACAAAGCAGCAACATTTTTTGGATGCATCGGGATAGATAAATTTGGGGAGATCCTGAAGA
AAAAAGCCGCTGAAGCCCATGTGGATGCTCATTACTATGAACAGAATGAGCAGCCAACAG
GAACTTGTGCTGCATGCATCACTGGTGGCAACAGGTCCCTTGTAGCTAATCTTGCTGCTG
CTAATTGTTATAAAAAGGAGAAACATCTTGATATGGAGAAAAACTGGACCTTGGTAGACA
AAGCAAGAGTTTATTATATAGCAGGTTTTTTCCTCACAGTTTCCCCAGAGTCAGTTTTAA
AAGTGGCTCACCATGCTTCTGAAAACAACAGAATTTTTACTTTGAATCTGTCTGCACCAT
TTATTAGTCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGACATACTTT
TTGGAAATGAGACGGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTGAAGATA
TTAAAGAAATAGCCAAAAAGACACAAGCTCTGCCAAAGGTGAACTCGAAGAGGCAGCGAA
TTGTGATTTTCACCCAAGGGAGAGATGACACTATACTGGCTACAGAAAGTGAAGTCACTG
CTTTTGCTGTCTTGGATCAAGACCAGAAGGAAATTGTTGATACCAATGGAGCTGGAGATG
CATTTGTTGGAGGTTTTCTGTCTCAACTGGTCTTTGACAAACCCCTGACTGAATGCATCC
GTGCTGGCCACTATGCAGCAAGTGTCATAATTAGGCGGACTGGCTGCACTTTTCCTGAGA
AGCCAGACTTCCACTGATGGAAAAGCAGGACACCCCAGCCGAGAAGTACAGACGCGGCTC
TGATTGCTTCCCGAGAACTCCCGTATTAATGAAGAAGAAAATTACCTGCCACCTTTCTTA
CTATAATAATGTTCATTGTTAATTTAGAGGGTACAGTAATGCACAGTAGAATCTCTATTC
TCTCAAAAACCTAAAAAGTGAGGTTTATTTCCATAGTTTGGTAGTACCACTTAAATGTCA
ATTAAACAAGCATATAACATTTCAATAGAAATTTTTGTTTCATTTTCAATTACTTTGTAA
ATTCATGTGTATTTAGCAAAGTGATCAGTTTTTTTTACATTTCTGCTTTGAATGCAGATG
CAATTTAATATAATAGATTTTTAAAAAGGAAATTAAAGATAATACATAAATCTTTAGCTT
TTATACAAATATATTTAATTCAGGAATGTGTGTGTACACATACATACACATATGTATGTT
CATACATGTACCACACATATACATAATAAATGGTCAGATAAGGTACAGAAATATTTATCT
TGCCAACTTATGCCAAATAATTTCTAGTATGTACTCAAAAATGTAATAAACTTTGGATAA
TTAAATAATTTGCCAAATTATGAGCTATGTTACAATATTCAAATCATAGTCTTATATTTA
CTTATGGTACTCTGTAATTTGATACAAATAAAAAGTTGTCATATAGGACTTTTTTCCTGT
CTTTGCCCTGTGCTCAGCAAACTAAGGAATAAAGATCATTGTTTAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGAAGATGGCAGCGGTTGAAGAAGAGCCAAAGCCCAAAAAGCTGAAGGTGGAGGCGC
TGCGAACGCTGAGTGAAAATATTCTCTTTGGAATGGGAAATCCTCTTCTTGACATCAGTG
CTGTAGTGGATAAGGATTTCCTTGATAAGTATTCTCTTAAACCAAATGACCAAATCTTGG
CTGAAGACAAACATAAGGAACTGTTTGATGAACTTGTAAAAAAATTCAAAGTTGAATATC
ATGCTGGTGGCTCTACCCAGAATTCAATTAAAGTGGCTCAGTGGATGATTCAGCAGCCAC
ACAAAGCAGCAACATTTTTTGGATGCATCGGGATAGATAAATTTGGGGAGATCCTGAAGA
AAAAAGCCGCTGAAGCCCATGTGGATGCTCATTACTATGAACAGAATGAGCAGCCAACAG
GAACTTGTGCTGCATGCATCACTGGTGGCAACAGGTCCCTTGTAGCTAATCTTGCTGCTG
CTAATTGTTATAAAAAGGAGAAACATCTTGATATGGAGAAAAACTGGACCTTGGTAGACA
AAGCAAGAGTTTATTATATAGCAGGTTTTTTCCTCACAGTTTCCCCAGAGTCAGTTTTAA
AAGTGGCTCACCATGCTTCTGAAAACAACAGAATTTTTACTTTGAATCTGTCTGCACCAT
TTATTAGTCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGACATACTTT
TTGGAAATGAGACGGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTGAAGATA
TTAAAGAAATAGCCAAAAAGACACAAGCTCTGCCAAAGGTGAACTCGAAGAGGCAGCGAA
TTGTGATTTTCACCCAAGGGAGAGATGACACTATACTGGCTACAGAAAGTGAAGTCACTG
CTTTTGCTGTCTTGGATCAAGACCAGAAGGAAATTGTTGATACCAATGGAGCTGGAGATG
CATTTGTTGGAGGTTTTCTGTCTCAACTGGTCTTTGACAAACCCCTGACTGAATGCATCC
GTGCTGGCCACTATGCAGCAAGTGTCATAATTAGGCGGACTGGCTGCACTTTTCCTGAGA
AGCCAGACTTCCACTGATGGAAAAGCAGGACACCCCAGCCGAGAAGTACAGACGCGGCTC
TGATTGCTTCCCGAGAACTCCCGTATTAATGAAGAAGAAAATTACCTGCCACCTTTCTTA
CTATAATAATGTTCATTGTTAATTTAGAGGGTACAGTAATGCACAGTAGAATCTCTATTC
TCTCAAAAACCTAAAAAGTGAGGTTTATTTCCATAGTTTGGTAGTACCACTTAAATGTCA
ATTAAACAAGCATATAACATTTCAATAGAAATTTTTGTTTCATTTTCAATTACTTTGTAA
ATTCATGTGTATTTAGCAAAGTGATCAGTTTTTTTTACATTTCTGCTTTGAATGCAGATG
CAATTTAATATAATAGATTTTTAAAAAGGAAATTAAAGATAATACATAAATCTTTAGCTT
TTATACAAATATATTTAATTCAGGAATGTGTGTGTACACATACATACACATATGTATGTT
CATACATGTACCACACATATACATAATAAATGGTCAGATAAGGTACAGAAATATTTATCT
TGCCAACTTATGCCAAATAATTTCTAGTATGTACTCAAAAATGTAATAAACTTTGGATAA
TTAAATAATTTGCCAAATTATGAGCTATGTTACAATATTCAAATCATAGTCTTATATTTA
CTTATGGTACTCTGTAATTTGATACAAATAAAAAGTTGTCATATAGGACTTTTTTCCTGT
CTTTGCCCTGTGCTCAGCAAACTAAGGAATAAAGATCATTGTTTAATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57162631|emb|CAI39671.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57162631|emb|CAI39671.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               365-484, - strand, RNAz p=0.745784
               

               
               1501-1658, - strand, RNAz p=0.979709

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-484, - strand, RNAz p=0.745784
               

               
               1501-1658, - strand, RNAz p=0.979709

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               47-1787, gnl|bosTau2|chr15 (23135208-23136925)
               

               
               47-1787, gnl|Mm7|chr11 (44435961-44437977)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-1787, gnl|bosTau2|chr15 (23135208-23136925)
               

               
               47-1787, gnl|Mm7|chr11 (44435961-44437977)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               clu (1.3161)
               

               
               sug (0.509165)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.3161)
               

               
               sug (0.509165)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	365-484, - strand, RNAz p=0.745784
	1501-1658, - strand, RNAz p=0.979709

	47-1787, gnl\|bosTau2\|chr15 (23135208-23136925)
	47-1787, gnl\|Mm7\|chr11 (44435961-44437977)

	clu (1.3161)
	sug (0.509165)
	cbe (0.239234)
	fcc (0.197785)
	cmu (0.186393)
	cki (0.165235)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	eep (0.122564)
	spc (0.113366)
	jej (0.0989218)