Non-Coding RNA Search

Ss1.1-Pig4-TMW8012I05.3

Sequence:


               
               TCAATACAGTATAATGAGCAAGGACTACCTACAGGGGAAGCCATTGTTGCCATGATAAAC
TACAATGAAGCTATGGCTGCTATTAAAGATTTGAATGATAGGCCAGTTGGCCCCCGGAAA
GTTAAGTTAATTTTGCTTTAGAAAGCATTTCTAAATTCAGTTACCTCCCCACAGTATTGA
TGCCGTAAAATGCATTTATGTTTTTTTAAAGTGTTGATTTTTAATTGTCTCATGAAACAT
TTAAATTTTGACTGTGAATAGAACAAATGTAAATAGTAGAATGTGAATCTGGTCTTCTTT
TGCTTGCAAATTTCCATTCACTTTTTCTAACTTTAAATTAAAATGCTCATTTTTTTTTTT
TCACAGTGGAGAGAACTAATTCCCTGAGTGCATTAATTTTTGTTGATGTCATAAGTAAAC
GTCAAGACTTGTATAAAGTAGAACTGTATTTGGGGAAGATAAGTTTTATATCCACTTTTG
TTTTCATTCTGTAGTTTACATTTTTATTCAAACTGTATAAAGAAGTGGTCAGTGACTGAT
TGTTCAGGGTTAGCATTTTCATTGCTAATTGCCTGCAGACTTAGTGCCCTTTTCCTTGTC
TGAGACATTACTGTGTTAATAAGCCTCTCATTAATCATAAGTAGTTCAAAATGGACAGAC
TGTGAACTTGAAGTTTACTTATGTAAAAAACTTAGCAAATTCTTAAAGTTTTCATGTTCA
TAACTTTCAAAGATTTATAAAAATAAAACTTGCAACTAAATAGACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAATACAGTATAATGAGCAAGGACTACCTACAGGGGAAGCCATTGTTGCCATGATAAAC
TACAATGAAGCTATGGCTGCTATTAAAGATTTGAATGATAGGCCAGTTGGCCCCCGGAAA
GTTAAGTTAATTTTGCTTTAGAAAGCATTTCTAAATTCAGTTACCTCCCCACAGTATTGA
TGCCGTAAAATGCATTTATGTTTTTTTAAAGTGTTGATTTTTAATTGTCTCATGAAACAT
TTAAATTTTGACTGTGAATAGAACAAATGTAAATAGTAGAATGTGAATCTGGTCTTCTTT
TGCTTGCAAATTTCCATTCACTTTTTCTAACTTTAAATTAAAATGCTCATTTTTTTTTTT
TCACAGTGGAGAGAACTAATTCCCTGAGTGCATTAATTTTTGTTGATGTCATAAGTAAAC
GTCAAGACTTGTATAAAGTAGAACTGTATTTGGGGAAGATAAGTTTTATATCCACTTTTG
TTTTCATTCTGTAGTTTACATTTTTATTCAAACTGTATAAAGAAGTGGTCAGTGACTGAT
TGTTCAGGGTTAGCATTTTCATTGCTAATTGCCTGCAGACTTAGTGCCCTTTTCCTTGTC
TGAGACATTACTGTGTTAATAAGCCTCTCATTAATCATAAGTAGTTCAAAATGGACAGAC
TGTGAACTTGAAGTTTACTTATGTAAAAAACTTAGCAAATTCTTAAAGTTTTCATGTTCA
TAACTTTCAAAGATTTATAAAAATAAAACTTGCAACTAAATAGACCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               368-484, + strand, RNAz p=0.701162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               368-484, + strand, RNAz p=0.701162

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-357, gnl|bosTau2|chr14 (43820457-43820808)
               

               
               1-357, gnl|Hg17|chr8 (94814949-94814580)
               

               
               1-357, gnl|Mm7|chr4 (12073547-12073876)
               


               
               368-715, gnl|bosTau2|chr14 (43820835-43821185)
               

               
               368-715, gnl|Hg17|chr8 (94814572-94814207)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-357, gnl|bosTau2|chr14 (43820457-43820808)
               

               
               1-357, gnl|Hg17|chr8 (94814949-94814580)
               

               
               1-357, gnl|Mm7|chr4 (12073547-12073876)
               


               
               368-715, gnl|bosTau2|chr14 (43820835-43821185)
               

               
               368-715, gnl|Hg17|chr8 (94814572-94814207)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ret (0.257467)
               

               
               tra (0.246184)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               ste (0.135208)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               ste (0.135208)

	1-357, gnl\|bosTau2\|chr14 (43820457-43820808)
	1-357, gnl\|Hg17\|chr8 (94814949-94814580)
	1-357, gnl\|Mm7\|chr4 (12073547-12073876)

	368-715, gnl\|bosTau2\|chr14 (43820835-43821185)
	368-715, gnl\|Hg17\|chr8 (94814572-94814207)

	ret (0.257467)
	tra (0.246184)
	mga (0.160205)
	isp (0.150376)
	pty (0.142714)
	ste (0.135208)