Ss1.1-Pig4-TMW8012J06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGACAACATCTGGAGGGGTATCCTCTCTGTAATTTTCTTCTTTCTTATCATCAGTGTCC TAGCTTTCCCCAATGGTCCGTTTACTCGACCTCATCCGGCCTTGTGGCGAATGGTTTTTG GGCTCAGCGTGCTCTACTTTCTGTTCCTGGTGTTCCTCCTCTTCCTGAACTTTGAGCAGG TTAAATCCCTGATGTACTGGCTGGATCCAAATCTTCGCTATGCCACGAGGGAGGCAGATG TCATGGAGTACGCTGTGAACTGCCACGTTATCACCTGGGAGCGGATTATCAGCCATTTTG ATATATTTGCATTTGGACATTTCTGGGGCTGGGCCATGAAGGCCTTGCTGATCCGTAGCT ACGGTCTCTGCTGGACAATCAGTATTACCTGGGAGCTGACTGAGCTTTTCTTCATGCATC TTCTGCCCAATTTTGCCGAGTGCTGGTGGGACCAAGTCATTCTGGACATCCTGCTCTGTA ACGGTGGCGGCATCTGGTTGGGCATGGTCGTCTGCCGGTTTTTAGAGATGAGAACTTACC ACTGGGCAAGCTTCAAGGATATCCACACCACCACCGGGAAAATCAAAAGAGCCGTGCTCC AGTTCACTCCTGCTAGCTGGACCTACGTTCGATGGTTTGACCCCAAATCTTCATTTCAGA GAGTGGCTGGAGTATACCTTTTCATGATCATCTGGCAGCTGACTGAGTTGAATACCTTCT TCCTGAAACACATCTTTGTGTTCCAAGCCAGCCATCCGTTAAGTTGGTGTAGAATTCTCT TTATCGGTGGCATCACGGCTCCCACAGTGAGACAGTACTATGCTTACCTCACCGACACGC AGTGCAAACGCGTGGGAACACAGTGCTGGGTGTTTGGGGTCATTGGTTTCCTGGAAGCTA TTGTCTGCATAAAATTTGGACAAGATCTCTTCTCTAAGACCCAGATACTCTATGTTGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGACAACATCTGGAGGGGTATCCTCTCTGTAATTTTCTTCTTTCTTATCATCAGTGTCC TAGCTTTCCCCAATGGTCCGTTTACTCGACCTCATCCGGCCTTGTGGCGAATGGTTTTTG GGCTCAGCGTGCTCTACTTTCTGTTCCTGGTGTTCCTCCTCTTCCTGAACTTTGAGCAGG TTAAATCCCTGATGTACTGGCTGGATCCAAATCTTCGCTATGCCACGAGGGAGGCAGATG TCATGGAGTACGCTGTGAACTGCCACGTTATCACCTGGGAGCGGATTATCAGCCATTTTG ATATATTTGCATTTGGACATTTCTGGGGCTGGGCCATGAAGGCCTTGCTGATCCGTAGCT ACGGTCTCTGCTGGACAATCAGTATTACCTGGGAGCTGACTGAGCTTTTCTTCATGCATC TTCTGCCCAATTTTGCCGAGTGCTGGTGGGACCAAGTCATTCTGGACATCCTGCTCTGTA ACGGTGGCGGCATCTGGTTGGGCATGGTCGTCTGCCGGTTTTTAGAGATGAGAACTTACC ACTGGGCAAGCTTCAAGGATATCCACACCACCACCGGGAAAATCAAAAGAGCCGTGCTCC AGTTCACTCCTGCTAGCTGGACCTACGTTCGATGGTTTGACCCCAAATCTTCATTTCAGA GAGTGGCTGGAGTATACCTTTTCATGATCATCTGGCAGCTGACTGAGTTGAATACCTTCT TCCTGAAACACATCTTTGTGTTCCAAGCCAGCCATCCGTTAAGTTGGTGTAGAATTCTCT TTATCGGTGGCATCACGGCTCCCACAGTGAGACAGTACTATGCTTACCTCACCGACACGC AGTGCAAACGCGTGGGAACACAGTGCTGGGTGTTTGGGGTCATTGGTTTCCTGGAAGCTA TTGTCTGCATAAAATTTGGACAAGATCTCTTCTCTAAGACCCAGATACTCTATGTTGTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 720-837, + strand, RNAz p=0.753176 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 720-837, + strand, RNAz p=0.753176 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 120-246, gnl|bosTau2|chr14 (42030230-42030104) | |
| 120-246, gnl|canFam2|chr29 (43775608-43775825) | |
| 120-246, gnl|danRer3|chr19 (28023977-28023780) | |
| 120-246, gnl|dasNov1|scaffold_280821 (304-465) | |
| 120-246, gnl|echTel1|scaffold_292591 (6374-6158) | |
| 120-246, gnl|fr1|chrUn (264151064-264151225) | |
| 120-246, gnl|galGal2|chr2 (126180153-126180361) | |
| 120-246, gnl|hg17|chr8 (97368392-97368610) | |
| 120-246, gnl|Hg17|chr8 (97368425-97368551) | |
| 120-246, gnl|loxAfr1|scaffold_18684 (43125-42953) | |
| 120-246, gnl|mm7|chr13 (64448363-64448594) | |
| 120-246, gnl|Mm7|chr13 (64448413-64448539) | |
| 120-246, gnl|monDom2|scaffold_3 (68822328-68822167) | |
| 120-246, gnl|oryCun1|scaffold_214606 (3811-4004) | |
| 120-246, gnl|panTro1|chr7 (99621488-99621706) | |
| 120-246, gnl|rheMac2|chr8 (98860631-98860849) | |
| 120-246, gnl|rn3|chr7 (68042206-68042400) | |
| 120-246, gnl|tetNig1|chr21 (1967036-1966881) | |
| 403-557, gnl|bosTau2|chr14 (42019388-42019234) | |
| 403-557, gnl|Hg17|chr8 (97381096-97381250) | |
| 403-557, gnl|Mm7|chr13 (64458420-64458574) | |
| 695-837, gnl|bosTau2|chr14 (42014593-42014451) | |
| 695-837, gnl|canFam2|chr29 (43787957-43788099) | |
| 695-837, gnl|danRer3|chr19 (28014217-28014067) | |
| 695-837, gnl|dasNov1|scaffold_19323 (44146-44004) | |
| 695-837, gnl|echTel1|scaffold_88033 (444-606) | |
| 695-837, gnl|fr1|chrUn (264152175-264152298) | |
| 695-837, gnl|galGal2|chr2 (126188868-126189011) | |
| 695-837, gnl|hg17|chr8 (97387822-97387964) | |
| 695-837, gnl|Hg17|chr8 (97387844-97387986) | |
| 695-837, gnl|loxAfr1|scaffold_11284 (38727-38585) | |
| 695-837, gnl|mm7|chr13 (64466440-64466580) | |
| 695-837, gnl|Mm7|chr13 (64466460-64466601) | |
| 695-837, gnl|monDom2|scaffold_3 (68810981-68810839) | |
| 695-837, gnl|oryCun1|scaffold_207902 (36598-36740) | |
| 695-837, gnl|panTro1|chr7 (99640990-99641132) | |
| 695-837, gnl|rheMac2|chr8 (98879937-98880079) | |
| 695-837, gnl|rn3|chr7 (68054817-68054957) | |
| 695-837, gnl|tetNig1|chr21 (1965988-1965865) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-246, gnl|bosTau2|chr14 (42030230-42030104) | |
| 120-246, gnl|canFam2|chr29 (43775608-43775825) | |
| 120-246, gnl|danRer3|chr19 (28023977-28023780) | |
| 120-246, gnl|dasNov1|scaffold_280821 (304-465) | |
| 120-246, gnl|echTel1|scaffold_292591 (6374-6158) | |
| 120-246, gnl|fr1|chrUn (264151064-264151225) | |
| 120-246, gnl|galGal2|chr2 (126180153-126180361) | |
| 120-246, gnl|hg17|chr8 (97368392-97368610) | |
| 120-246, gnl|Hg17|chr8 (97368425-97368551) | |
| 120-246, gnl|loxAfr1|scaffold_18684 (43125-42953) | |
| 120-246, gnl|mm7|chr13 (64448363-64448594) | |
| 120-246, gnl|Mm7|chr13 (64448413-64448539) | |
| 120-246, gnl|monDom2|scaffold_3 (68822328-68822167) | |
| 120-246, gnl|oryCun1|scaffold_214606 (3811-4004) | |
| 120-246, gnl|panTro1|chr7 (99621488-99621706) | |
| 120-246, gnl|rheMac2|chr8 (98860631-98860849) | |
| 120-246, gnl|rn3|chr7 (68042206-68042400) | |
| 120-246, gnl|tetNig1|chr21 (1967036-1966881) | |
| 403-557, gnl|bosTau2|chr14 (42019388-42019234) | |
| 403-557, gnl|Hg17|chr8 (97381096-97381250) | |
| 403-557, gnl|Mm7|chr13 (64458420-64458574) | |
| 695-837, gnl|bosTau2|chr14 (42014593-42014451) | |
| 695-837, gnl|canFam2|chr29 (43787957-43788099) | |
| 695-837, gnl|danRer3|chr19 (28014217-28014067) | |
| 695-837, gnl|dasNov1|scaffold_19323 (44146-44004) | |
| 695-837, gnl|echTel1|scaffold_88033 (444-606) | |
| 695-837, gnl|fr1|chrUn (264152175-264152298) | |
| 695-837, gnl|galGal2|chr2 (126188868-126189011) | |
| 695-837, gnl|hg17|chr8 (97387822-97387964) | |
| 695-837, gnl|Hg17|chr8 (97387844-97387986) | |
| 695-837, gnl|loxAfr1|scaffold_11284 (38727-38585) | |
| 695-837, gnl|mm7|chr13 (64466440-64466580) | |
| 695-837, gnl|Mm7|chr13 (64466460-64466601) | |
| 695-837, gnl|monDom2|scaffold_3 (68810981-68810839) | |
| 695-837, gnl|oryCun1|scaffold_207902 (36598-36740) | |
| 695-837, gnl|panTro1|chr7 (99640990-99641132) | |
| 695-837, gnl|rheMac2|chr8 (98879937-98880079) | |
| 695-837, gnl|rn3|chr7 (68054817-68054957) | |
| 695-837, gnl|tetNig1|chr21 (1965988-1965865) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| cly (0.120642) |