Ss1.1-Pig4-TMW8012J18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAAGCCTGACTCCGACGGCTTCATCGTGGTGTATCTGCCCGATGGCAGAGCCCTGTGC CTGTCCAGAACTACTACATCGTGATGGTGCCACTGCGCAAATCTCGTGGCGGCCAGTTCC TGACCCCACTGGGGAGTCCAGAGGACATGGACCTGGAGGAGCTGATCCAGGACATTGCAC GGCTGCAGAGGCGCAGGCTGCGGCACTCGCGCCAGCTGGAGGTGCCCCGGCCCTACATTG CTGCTCGCTTCTCAGTGTTGCCACCAACCTTCCATCCTGGTGACCAGAAGCAGTATGGTG GCTTTGACAACAGGGGCCTGGAGCCTGGCCACAGATATGTTCTCTTTGTGCTTGCTGTGC TGCAGAAGAGCGAGCCTACATTTGCGGCCAGCCCATTCTCAGACCCCTTCCAGCTGGATA ACCCAGACCCTCAGCCCATCGTGGACGGTGAGGAGGGGCTCATCTGGGTGATTGGGCCCG TGCTGGCTGTCGTCTTTATCATCTGCATCGTTATTGCCATCTTGCTCTACAAGAATAAGC CTGACAGTAAACGCAAGGACTCGGAGCCCCGCACCAAATGCCTCCTGAACAATGCTGACC TTGCTCCCCACCACCCCAAGGACCCCGTGGAAATGCGACGCATTAACTTCCAGACGCCAG GCATGCTCAGCCACCCACCCATCCCCATCGCAGACATGGCAGAGCACACGGAACGCCTCA AAGCCAACGACAGCCTCAAGCTCTCCCAGGAGTATGAGTCCATCGACCCGGGCCAGCAGT TCACATGGGAGCACTCCAACCTGGAAGTGAACAAGCCCAAGAACCGCTATGCCAACGTTA TCGCCTACGACCACTCTCGCGTCATCCTCCAGCCTATTGAAGGCATCGTGGGCAGCGATT ATATCAACGCCAACTATGTGGATGGCTACCGGCGGCAGAATGCATACATCGCCACGCAGG GGCCACTGCCTGAGACCTTTGGTGACTTCTGGCGTATGGTGTGGGAGCAGCGCTCCGCTA CCATCGTTATGATGACGCGGCTAGAGGAGAAATCACGGATCAAATGTGATCAGTATTGGC CCAACAGGGGCACGGAGACCTATGGCTTCATCCAGGTCACGCTGCTGGACACCATCGAGC TGGCCACATTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAAGCCTGACTCCGACGGCTTCATCGTGGTGTATCTGCCCGATGGCAGAGCCCTGTGC CTGTCCAGAACTACTACATCGTGATGGTGCCACTGCGCAAATCTCGTGGCGGCCAGTTCC TGACCCCACTGGGGAGTCCAGAGGACATGGACCTGGAGGAGCTGATCCAGGACATTGCAC GGCTGCAGAGGCGCAGGCTGCGGCACTCGCGCCAGCTGGAGGTGCCCCGGCCCTACATTG CTGCTCGCTTCTCAGTGTTGCCACCAACCTTCCATCCTGGTGACCAGAAGCAGTATGGTG GCTTTGACAACAGGGGCCTGGAGCCTGGCCACAGATATGTTCTCTTTGTGCTTGCTGTGC TGCAGAAGAGCGAGCCTACATTTGCGGCCAGCCCATTCTCAGACCCCTTCCAGCTGGATA ACCCAGACCCTCAGCCCATCGTGGACGGTGAGGAGGGGCTCATCTGGGTGATTGGGCCCG TGCTGGCTGTCGTCTTTATCATCTGCATCGTTATTGCCATCTTGCTCTACAAGAATAAGC CTGACAGTAAACGCAAGGACTCGGAGCCCCGCACCAAATGCCTCCTGAACAATGCTGACC TTGCTCCCCACCACCCCAAGGACCCCGTGGAAATGCGACGCATTAACTTCCAGACGCCAG GCATGCTCAGCCACCCACCCATCCCCATCGCAGACATGGCAGAGCACACGGAACGCCTCA AAGCCAACGACAGCCTCAAGCTCTCCCAGGAGTATGAGTCCATCGACCCGGGCCAGCAGT TCACATGGGAGCACTCCAACCTGGAAGTGAACAAGCCCAAGAACCGCTATGCCAACGTTA TCGCCTACGACCACTCTCGCGTCATCCTCCAGCCTATTGAAGGCATCGTGGGCAGCGATT ATATCAACGCCAACTATGTGGATGGCTACCGGCGGCAGAATGCATACATCGCCACGCAGG GGCCACTGCCTGAGACCTTTGGTGACTTCTGGCGTATGGTGTGGGAGCAGCGCTCCGCTA CCATCGTTATGATGACGCGGCTAGAGGAGAAATCACGGATCAAATGTGATCAGTATTGGC CCAACAGGGGCACGGAGACCTATGGCTTCATCCAGGTCACGCTGCTGGACACCATCGAGC TGGCCACATTCT |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 160-376, gnl|bosTau2|chr7 (15528268-15528484) | |
| 160-376, gnl|canFam2|chr20 (57603944-57603746) | |
| 160-376, gnl|danRer3|chrUn (36484671-36484471) | |
| 160-376, gnl|echTel1|scaffold_307615 (4132-4320) | |
| 160-376, gnl|fr1|chrUn (101482294-101482480) | |
| 160-376, gnl|galGal2|chr28 (3992271-3992073) | |
| 160-376, gnl|hg17|chr19 (5170945-5171143) | |
| 160-376, gnl|Hg17|chr19 (5171167-5170951) | |
| 160-376, gnl|loxAfr1|scaffold_64102 (4624-4426) | |
| 160-376, gnl|mm7|chr17 (54581427-54581625) | |
| 160-376, gnl|Mm7|chr17 (54581649-54581433) | |
| 160-376, gnl|monDom2|scaffold_85 (2568041-2568239) | |
| 160-376, gnl|oryCun1|scaffold_197780 (69419-69602) | |
| 160-376, gnl|panTro1|chr20 (5503951-5504149) | |
| 160-376, gnl|rheMac2|chr19 (5130095-5130293) | |
| 160-376, gnl|rn3|chrUn (25351636-25351438) | |
| 160-376, gnl|tetNig1|chr15 (4509300-4509123) | |
| 160-376, gnl|xenTro1|scaffold_157 (675878-675680) | |
| 378-535, gnl|bosTau2|chr7 (15528962-15529119) | |
| 378-535, gnl|Hg17|chr19 (5170478-5170321) | |
| 378-535, gnl|Mm7|chr17 (54580535-54580378) | |
| 881-1058, gnl|bosTau2|chr7 (15532934-15533111) | |
| 881-1058, gnl|canFam2|chr20 (57609211-57609013) | |
| 881-1058, gnl|danRer3|chrUn (36506863-36506665) | |
| 881-1058, gnl|dasNov1|scaffold_10403 (40639-40440) | |
| 881-1058, gnl|echTel1|scaffold_310172 (4704-4507) | |
| 881-1058, gnl|fr1|chrUn (101455107-101455299) | |
| 881-1058, gnl|galGal2|chr28 (4007977-4007774) | |
| 881-1058, gnl|hg17|chr19 (5165568-5165767) | |
| 881-1058, gnl|Hg17|chr19 (5165749-5165572) | |
| 881-1058, gnl|loxAfr1|scaffold_64102 (10492-10293) | |
| 881-1058, gnl|mm7|chr17 (54577155-54577353) | |
| 881-1058, gnl|Mm7|chr17 (54577336-54577159) | |
| 881-1058, gnl|oryCun1|scaffold_212283 (55903-56053) | |
| 881-1058, gnl|panTro1|chr20 (5498581-5498780) | |
| 881-1058, gnl|rheMac2|chr19 (5124676-5124875) | |
| 881-1058, gnl|rn3|chrUn (25354268-25354070) | |
| 881-1058, gnl|tetNig1|chr15 (4512724-4512527) | |
| 881-1058, gnl|xenTro1|scaffold_157 (719387-719202) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 160-376, gnl|bosTau2|chr7 (15528268-15528484) | |
| 160-376, gnl|canFam2|chr20 (57603944-57603746) | |
| 160-376, gnl|danRer3|chrUn (36484671-36484471) | |
| 160-376, gnl|echTel1|scaffold_307615 (4132-4320) | |
| 160-376, gnl|fr1|chrUn (101482294-101482480) | |
| 160-376, gnl|galGal2|chr28 (3992271-3992073) | |
| 160-376, gnl|hg17|chr19 (5170945-5171143) | |
| 160-376, gnl|Hg17|chr19 (5171167-5170951) | |
| 160-376, gnl|loxAfr1|scaffold_64102 (4624-4426) | |
| 160-376, gnl|mm7|chr17 (54581427-54581625) | |
| 160-376, gnl|Mm7|chr17 (54581649-54581433) | |
| 160-376, gnl|monDom2|scaffold_85 (2568041-2568239) | |
| 160-376, gnl|oryCun1|scaffold_197780 (69419-69602) | |
| 160-376, gnl|panTro1|chr20 (5503951-5504149) | |
| 160-376, gnl|rheMac2|chr19 (5130095-5130293) | |
| 160-376, gnl|rn3|chrUn (25351636-25351438) | |
| 160-376, gnl|tetNig1|chr15 (4509300-4509123) | |
| 160-376, gnl|xenTro1|scaffold_157 (675878-675680) | |
| 378-535, gnl|bosTau2|chr7 (15528962-15529119) | |
| 378-535, gnl|Hg17|chr19 (5170478-5170321) | |
| 378-535, gnl|Mm7|chr17 (54580535-54580378) | |
| 881-1058, gnl|bosTau2|chr7 (15532934-15533111) | |
| 881-1058, gnl|canFam2|chr20 (57609211-57609013) | |
| 881-1058, gnl|danRer3|chrUn (36506863-36506665) | |
| 881-1058, gnl|dasNov1|scaffold_10403 (40639-40440) | |
| 881-1058, gnl|echTel1|scaffold_310172 (4704-4507) | |
| 881-1058, gnl|fr1|chrUn (101455107-101455299) | |
| 881-1058, gnl|galGal2|chr28 (4007977-4007774) | |
| 881-1058, gnl|hg17|chr19 (5165568-5165767) | |
| 881-1058, gnl|Hg17|chr19 (5165749-5165572) | |
| 881-1058, gnl|loxAfr1|scaffold_64102 (10492-10293) | |
| 881-1058, gnl|mm7|chr17 (54577155-54577353) | |
| 881-1058, gnl|Mm7|chr17 (54577336-54577159) | |
| 881-1058, gnl|oryCun1|scaffold_212283 (55903-56053) | |
| 881-1058, gnl|panTro1|chr20 (5498581-5498780) | |
| 881-1058, gnl|rheMac2|chr19 (5124676-5124875) | |
| 881-1058, gnl|rn3|chrUn (25354268-25354070) | |
| 881-1058, gnl|tetNig1|chr15 (4512724-4512527) | |
| 881-1058, gnl|xenTro1|scaffold_157 (719387-719202) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| jca (0.11396) |