Ss1.1-Pig4-TMW8012L01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCTCACTTAGATCAAACTTCTCCTGGGCCTGCTTCCGGATGAGCTCTGCCTTGCAAAT GAGACGAGGCATGAGCAGGAGCACCAGGACACAGTCGTGGTCCCCACCTGGGCGAAGGAA GCTGTCGGGCATGAAGGCTGTCAGCAGGGACATGTGCCGGTTGGCCTGCGCCACCTCCAT CTGCCTCAATTCCATCTCAATGGCCTTGGCATGGGCCTTAGTCTCAGCAAACTTGATTTT GAAGTCAAAAGTCTCCGGAGGGGGCTGCTGCTGCCTCTCCACAGATGCTTCCTGCTGGTT TGTTAGTTCCCGATTCACATCCTGCAGGTGGGCGGTCAGCTGGCGATACTTCTTGATGGT TTGCTGATAGTCCGCAACCGTCTCCTGGGCCGCCTCCACCCGCTTCTGAGCCTCTCGTAC CCGCGCACCCGCCATATCCAGCTGCTCCCGCAGCTCCAGTTCTGTTTCCCGTGCATTCTC CTGCAGCTCGTCGTTCATCTCATTCATCGCTTCCAAGTCCCCCACAGTCTCTCTCAATTC CCGCACTTTCTCTTACAGATTCAGGTTGCGGTCTGTCAGCATCTCCACCATCTCCTCAGC ACCCAGAGCAGCATCCACCTGCTCCTTGAGCTCATCAATGGTGCTCTCTGCCTGGCTCAG CTCCTCCTGCAGACGCTCCCGCTGTTGCCTCACAACTTCCAGCTCTTGGTTCTTCTTTTC CATGAGCTTCTGGAGTTTCACATGCTCCTGCTTCTCTGAGGACGAAAGATCCCGCATCCT CACCAGGGCATCCTTTAGGCGGGCGTTCTGCTCCTCCAGCTGCTTGAGCTGATAACTGGA CGCAGCGCCATCTGAGCCCTTCTCTTCAATCTCAGCCTTGAGGATCTCCAAGTCAGTGGT GAGCTCGTCCACACGCTCCTTCAGCGCCTCCACCTCCTGCTGCAGGGACTCGGCCCGCTC CTCAGCCATCTCCTTGTCCAGAGTGGCCATCTCAATGGCATCGGCAGTGTCAGCCATCTC CTCCATGTAGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCTCACTTAGATCAAACTTCTCCTGGGCCTGCTTCCGGATGAGCTCTGCCTTGCAAAT GAGACGAGGCATGAGCAGGAGCACCAGGACACAGTCGTGGTCCCCACCTGGGCGAAGGAA GCTGTCGGGCATGAAGGCTGTCAGCAGGGACATGTGCCGGTTGGCCTGCGCCACCTCCAT CTGCCTCAATTCCATCTCAATGGCCTTGGCATGGGCCTTAGTCTCAGCAAACTTGATTTT GAAGTCAAAAGTCTCCGGAGGGGGCTGCTGCTGCCTCTCCACAGATGCTTCCTGCTGGTT TGTTAGTTCCCGATTCACATCCTGCAGGTGGGCGGTCAGCTGGCGATACTTCTTGATGGT TTGCTGATAGTCCGCAACCGTCTCCTGGGCCGCCTCCACCCGCTTCTGAGCCTCTCGTAC CCGCGCACCCGCCATATCCAGCTGCTCCCGCAGCTCCAGTTCTGTTTCCCGTGCATTCTC CTGCAGCTCGTCGTTCATCTCATTCATCGCTTCCAAGTCCCCCACAGTCTCTCTCAATTC CCGCACTTTCTCTTACAGATTCAGGTTGCGGTCTGTCAGCATCTCCACCATCTCCTCAGC ACCCAGAGCAGCATCCACCTGCTCCTTGAGCTCATCAATGGTGCTCTCTGCCTGGCTCAG CTCCTCCTGCAGACGCTCCCGCTGTTGCCTCACAACTTCCAGCTCTTGGTTCTTCTTTTC CATGAGCTTCTGGAGTTTCACATGCTCCTGCTTCTCTGAGGACGAAAGATCCCGCATCCT CACCAGGGCATCCTTTAGGCGGGCGTTCTGCTCCTCCAGCTGCTTGAGCTGATAACTGGA CGCAGCGCCATCTGAGCCCTTCTCTTCAATCTCAGCCTTGAGGATCTCCAAGTCAGTGGT GAGCTCGTCCACACGCTCCTTCAGCGCCTCCACCTCCTGCTGCAGGGACTCGGCCCGCTC CTCAGCCATCTCCTTGTCCAGAGTGGCCATCTCAATGGCATCGGCAGTGTCAGCCATCTC CTCCATGTAGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 617-780, - strand, RNAz p=0.616403 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 617-780, - strand, RNAz p=0.616403 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 51-206, gnl|bosTau2|chr11 (7954324-7954169) | |
| 51-206, gnl|Hg17|chr2 (74507509-74507664) | |
| 51-206, gnl|Mm7|chr6 (83217091-83216936) | |
| 321-514, gnl|bosTau2|chr11 (7953719-7953526) | |
| 321-514, gnl|canFam2|chr17 (51820807-51820574) | |
| 321-514, gnl|danRer3|chrUn (120216035-120215800) | |
| 321-514, gnl|dasNov1|scaffold_13624 (3641-3397) | |
| 321-514, gnl|echTel1|scaffold_310888 (79980-80201) | |
| 321-514, gnl|fr1|chrUn (240376325-240376112) | |
| 321-514, gnl|hg17|chr2 (74508079-74508332) | |
| 321-514, gnl|Hg17|chr2 (74508081-74508518) | |
| 321-514, gnl|loxAfr1|scaffold_43500 (1347-1588) | |
| 321-514, gnl|mm7|chr6 (83216537-83216338) | |
| 321-514, gnl|Mm7|chr6 (83216533-83216340) | |
| 321-514, gnl|monDom2|scaffold_10 (48355360-48355119) | |
| 321-514, gnl|oryCun1|scaffold_200457 (127241-127031) | |
| 321-514, gnl|panTro1|chr12 (76910932-76911185) | |
| 321-514, gnl|rheMac2|chr13 (74597220-74597473) | |
| 321-514, gnl|rn3|chr4 (117645953-117645743) | |
| 321-514, gnl|tetNig1|chr10 (11866241-11866032) | |
| 321-514, gnl|xenTro1|scaffold_778 (74943-75199) | |
| 617-780, gnl|bosTau2|chr11 (7953137-7952974) | |
| 617-780, gnl|Hg17|chr2 (74508966-74509129) | |
| 617-780, gnl|Mm7|chr6 (83215954-83215791) | |
| 857-1032, gnl|bosTau2|chr11 (7952724-7952549) | |
| 857-1032, gnl|canFam2|chr17 (51819814-51819660) | |
| 857-1032, gnl|danRer3|chrUn (120210011-120209859) | |
| 857-1032, gnl|echTel1|scaffold_310888 (81010-81164) | |
| 857-1032, gnl|fr1|chrUn (240375463-240375311) | |
| 857-1032, gnl|galGal2|chrUn (137672828-137672979) | |
| 857-1032, gnl|hg17|chr2 (74509399-74509553) | |
| 857-1032, gnl|Hg17|chr2 (74509402-74509577) | |
| 857-1032, gnl|loxAfr1|scaffold_43500 (2229-2383) | |
| 857-1032, gnl|mm7|chr6 (83215483-83215329) | |
| 857-1032, gnl|Mm7|chr6 (83215478-83215303) | |
| 857-1032, gnl|monDom2|scaffold_10 (48353779-48353625) | |
| 857-1032, gnl|panTro1|chr12 (76912248-76912402) | |
| 857-1032, gnl|rheMac2|chr13 (74598559-74598713) | |
| 857-1032, gnl|rn3|chr4 (117645006-117644852) | |
| 857-1032, gnl|tetNig1|chr10 (11865398-11865247) | |
| 857-1032, gnl|xenTro1|scaffold_778 (76712-76866) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-206, gnl|bosTau2|chr11 (7954324-7954169) | |
| 51-206, gnl|Hg17|chr2 (74507509-74507664) | |
| 51-206, gnl|Mm7|chr6 (83217091-83216936) | |
| 321-514, gnl|bosTau2|chr11 (7953719-7953526) | |
| 321-514, gnl|canFam2|chr17 (51820807-51820574) | |
| 321-514, gnl|danRer3|chrUn (120216035-120215800) | |
| 321-514, gnl|dasNov1|scaffold_13624 (3641-3397) | |
| 321-514, gnl|echTel1|scaffold_310888 (79980-80201) | |
| 321-514, gnl|fr1|chrUn (240376325-240376112) | |
| 321-514, gnl|hg17|chr2 (74508079-74508332) | |
| 321-514, gnl|Hg17|chr2 (74508081-74508518) | |
| 321-514, gnl|loxAfr1|scaffold_43500 (1347-1588) | |
| 321-514, gnl|mm7|chr6 (83216537-83216338) | |
| 321-514, gnl|Mm7|chr6 (83216533-83216340) | |
| 321-514, gnl|monDom2|scaffold_10 (48355360-48355119) | |
| 321-514, gnl|oryCun1|scaffold_200457 (127241-127031) | |
| 321-514, gnl|panTro1|chr12 (76910932-76911185) | |
| 321-514, gnl|rheMac2|chr13 (74597220-74597473) | |
| 321-514, gnl|rn3|chr4 (117645953-117645743) | |
| 321-514, gnl|tetNig1|chr10 (11866241-11866032) | |
| 321-514, gnl|xenTro1|scaffold_778 (74943-75199) | |
| 617-780, gnl|bosTau2|chr11 (7953137-7952974) | |
| 617-780, gnl|Hg17|chr2 (74508966-74509129) | |
| 617-780, gnl|Mm7|chr6 (83215954-83215791) | |
| 857-1032, gnl|bosTau2|chr11 (7952724-7952549) | |
| 857-1032, gnl|canFam2|chr17 (51819814-51819660) | |
| 857-1032, gnl|danRer3|chrUn (120210011-120209859) | |
| 857-1032, gnl|echTel1|scaffold_310888 (81010-81164) | |
| 857-1032, gnl|fr1|chrUn (240375463-240375311) | |
| 857-1032, gnl|galGal2|chrUn (137672828-137672979) | |
| 857-1032, gnl|hg17|chr2 (74509399-74509553) | |
| 857-1032, gnl|Hg17|chr2 (74509402-74509577) | |
| 857-1032, gnl|loxAfr1|scaffold_43500 (2229-2383) | |
| 857-1032, gnl|mm7|chr6 (83215483-83215329) | |
| 857-1032, gnl|Mm7|chr6 (83215478-83215303) | |
| 857-1032, gnl|monDom2|scaffold_10 (48353779-48353625) | |
| 857-1032, gnl|panTro1|chr12 (76912248-76912402) | |
| 857-1032, gnl|rheMac2|chr13 (74598559-74598713) | |
| 857-1032, gnl|rn3|chr4 (117645006-117644852) | |
| 857-1032, gnl|tetNig1|chr10 (11865398-11865247) | |
| 857-1032, gnl|xenTro1|scaffold_778 (76712-76866) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) |