Ss1.1-Pig4-TMW8012L07.5
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CAATAAACAAAATGTGGGTGGTTTCTGTGGCATTTTAGGCATAAGTTTGCTATTAGCATC
TGCTTTTCTCCATCGTAAATATCAGATCATGTTTTTATTTTTTAAAGATTTCATATATTA
CTGACTAAAGGCTACTTTTCACCTCACCTGGGAGCTAACATTGTGTGGGCCACTCCTGCC
TCAGCCCCGTGCAGCACCCCAACTTGGTGCTGGAAGAGGAGGGCAGCCAGTGTCCCTCCG
GGGTGTGCAGAGGCACCAAGACCAGGAGGCAGAGAGCTCCCCAGGGCAGCGTCAGATTAC
CTTTCTAGAAGGAACCAAGCACAGGATGTGTAACCGGAGTAAACTTTCAGTTTGCCTTGA
GTTTAAACCTGAATGGGGAAAAATCACATTCCACGGCACCTCACAATACTGCTGCTACTC
TGTAGTCAACCACATGGCTAAATGATGCTCTATTCCTAAATAATAACAATAGGATTGTCG
GTGCAGGCTGAGCCACCATGGCACACCTTCCAAAAGAAGTGAGTTGTATAGGCTACTTAG
GGAACCCCAGGGAAACTGGTACCCTGTGGCTGAGAACAGTATCTGCCATTGGCATAAAGG
CCCACTATAAAAGGCAAGGTAAACATATCCAACTGATTAAACCCCTTGAGATGTGTGTGA
CTCCCCAAAGAGTCTATTTCATTAGGAATTTTGTTATTTGAGTGAATGTCACATAGGTAT
CCTTAATAATGCAGAAGGAAATTATCTTTGTATTATTGTGATTAGTTGTTGCTTATTATT
TTATACTCAGTATTAATGTGGTACACTGTTACTTTTTTTTTTTTTTGCTTTTGTAAATTA
TATTCTAATTTATTGCCATGTTTCCTAACACTTGTCCTACATTCAATCTCCTGCTTGTAA
TGAAAATGAAAAATTCATTGTAACACTTGATGGAGTGAAATTCCACACCAGGCACAGATT
TTTTTTAACATAGATAATTTAGTAAAAATAAAAATT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CAATAAACAAAATGTGGGTGGTTTCTGTGGCATTTTAGGCATAAGTTTGCTATTAGCATC
TGCTTTTCTCCATCGTAAATATCAGATCATGTTTTTATTTTTTAAAGATTTCATATATTA
CTGACTAAAGGCTACTTTTCACCTCACCTGGGAGCTAACATTGTGTGGGCCACTCCTGCC
TCAGCCCCGTGCAGCACCCCAACTTGGTGCTGGAAGAGGAGGGCAGCCAGTGTCCCTCCG
GGGTGTGCAGAGGCACCAAGACCAGGAGGCAGAGAGCTCCCCAGGGCAGCGTCAGATTAC
CTTTCTAGAAGGAACCAAGCACAGGATGTGTAACCGGAGTAAACTTTCAGTTTGCCTTGA
GTTTAAACCTGAATGGGGAAAAATCACATTCCACGGCACCTCACAATACTGCTGCTACTC
TGTAGTCAACCACATGGCTAAATGATGCTCTATTCCTAAATAATAACAATAGGATTGTCG
GTGCAGGCTGAGCCACCATGGCACACCTTCCAAAAGAAGTGAGTTGTATAGGCTACTTAG
GGAACCCCAGGGAAACTGGTACCCTGTGGCTGAGAACAGTATCTGCCATTGGCATAAAGG
CCCACTATAAAAGGCAAGGTAAACATATCCAACTGATTAAACCCCTTGAGATGTGTGTGA
CTCCCCAAAGAGTCTATTTCATTAGGAATTTTGTTATTTGAGTGAATGTCACATAGGTAT
CCTTAATAATGCAGAAGGAAATTATCTTTGTATTATTGTGATTAGTTGTTGCTTATTATT
TTATACTCAGTATTAATGTGGTACACTGTTACTTTTTTTTTTTTTTGCTTTTGTAAATTA
TATTCTAATTTATTGCCATGTTTCCTAACACTTGTCCTACATTCAATCTCCTGCTTGTAA
TGAAAATGAAAAATTCATTGTAACACTTGATGGAGTGAAATTCCACACCAGGCACAGATT
TTTTTTAACATAGATAATTTAGTAAAAATAAAAATT
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
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6-636, gnl|bosTau2|chr20 (9198014-9198635) |
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6-636, gnl|canFam2|chr2 (53823658-53824187) |
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6-636, gnl|danRer3|chr22 (23924647-23925119) |
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6-636, gnl|echTel1|scaffold_317120 (4388-3822) |
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6-636, gnl|galGal2|chrZ (3656445-3656981) |
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6-636, gnl|hg17|chr5 (64480660-64481229) |
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6-636, gnl|Hg17|chr5 (64481316-64480688) |
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6-636, gnl|loxAfr1|scaffold_12715 (88867-89419) |
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6-636, gnl|mm7|chr13 (101634062-101633522) |
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6-636, gnl|Mm7|chr13 (101633431-101634032) |
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6-636, gnl|monDom2|scaffold_27 (30336724-30337331) |
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6-636, gnl|oryCun1|scaffold_215292 (51075-50538) |
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6-636, gnl|panTro1|chr4 (51459810-51459241) |
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6-636, gnl|rheMac2|chr6 (63010458-63011015) |
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6-636, gnl|rn3|chr2 (35354781-35354254) |
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6-636, gnl|xenTro1|scaffold_597 (532796-532240) |
| |
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658-996, gnl|bosTau2|chr20 (9198633-9198962) |
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658-996, gnl|Hg17|chr5 (64480690-64480337) |
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658-996, gnl|Mm7|chr13 (101634030-101634387) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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6-636, gnl|bosTau2|chr20 (9198014-9198635) |
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6-636, gnl|canFam2|chr2 (53823658-53824187) |
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6-636, gnl|danRer3|chr22 (23924647-23925119) |
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6-636, gnl|echTel1|scaffold_317120 (4388-3822) |
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6-636, gnl|galGal2|chrZ (3656445-3656981) |
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6-636, gnl|hg17|chr5 (64480660-64481229) |
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6-636, gnl|Hg17|chr5 (64481316-64480688) |
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6-636, gnl|loxAfr1|scaffold_12715 (88867-89419) |
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6-636, gnl|mm7|chr13 (101634062-101633522) |
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6-636, gnl|Mm7|chr13 (101633431-101634032) |
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6-636, gnl|monDom2|scaffold_27 (30336724-30337331) |
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6-636, gnl|oryCun1|scaffold_215292 (51075-50538) |
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6-636, gnl|panTro1|chr4 (51459810-51459241) |
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6-636, gnl|rheMac2|chr6 (63010458-63011015) |
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6-636, gnl|rn3|chr2 (35354781-35354254) |
|
6-636, gnl|xenTro1|scaffold_597 (532796-532240) |
| |
|
658-996, gnl|bosTau2|chr20 (9198633-9198962) |
|
658-996, gnl|Hg17|chr5 (64480690-64480337) |
|
658-996, gnl|Mm7|chr13 (101634030-101634387) |
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fcc (0.39557) |
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ecc (0.115035) |
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fcc (0.39557) |
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ecc (0.115035) |