Non-Coding RNA Search

Ss1.1-Pig4-TMW8012L15.3

Sequence:


               
               CATTTTCCCTTCAGTCTAGGGGGGATACTTCCCTTCTCTCATCCTTTTAACAAGTAGCAG
AATTTCTTTGATACTTCTTTCACAGATGTCTCTTACTCGTCAGCTGTCTCTTTCTTCTTT
TCTACAACCAGCACTATTTAGGTCTTACACATGCGCGGGTCTCTATTGGTGCCTCTAATT
TTTGTACCCCATTAACTTGGACTTGGCCTGCAATGGAACTGAATTTATCCTCCTTAAGGT
CTATATAAAGAAAATGATGGTGTGCTACTGCCATCTAATGGAGATAAGGAAAATGACAGT
GGAAAAACAAAGCACGTTTAGGGCCGGGTTTTCTAAAGGATTTTTGATACCGTCCTGTGG
GGGGAGGGGGTCGGGAATGATGACACAGCAGTTGCCATCTTGAAATCTGCCCTTTCCTGC
GGAAAGGGTGATTTGAAACGCAATGCAACCATCGTCACAAGGCCCCTGGACTATGGCTGA
ATCTTGACATTTAGAATTTGAAGTTGTTTTTTAATGAAGATGGTAGCAACAGATTGTTGA
GACAGGCATCTCATTTTGTCAAGCTCTTAACCATTCAGTTATTTTGTCAGGGGCCCTTAA
CATTTTAAATATCAACCAATACATAGTTTTAGCTTCTGAAGATATTGGAAGATTGTATGT
AATACAGGTATCTATCTGTCGTGCTCTAGTAATTTATATATTCAGAAAGATTTTATAGCA
TTTCTGGATGTACTGCAGTAGCCAATATAAGCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTTCCCTTCAGTCTAGGGGGGATACTTCCCTTCTCTCATCCTTTTAACAAGTAGCAG
AATTTCTTTGATACTTCTTTCACAGATGTCTCTTACTCGTCAGCTGTCTCTTTCTTCTTT
TCTACAACCAGCACTATTTAGGTCTTACACATGCGCGGGTCTCTATTGGTGCCTCTAATT
TTTGTACCCCATTAACTTGGACTTGGCCTGCAATGGAACTGAATTTATCCTCCTTAAGGT
CTATATAAAGAAAATGATGGTGTGCTACTGCCATCTAATGGAGATAAGGAAAATGACAGT
GGAAAAACAAAGCACGTTTAGGGCCGGGTTTTCTAAAGGATTTTTGATACCGTCCTGTGG
GGGGAGGGGGTCGGGAATGATGACACAGCAGTTGCCATCTTGAAATCTGCCCTTTCCTGC
GGAAAGGGTGATTTGAAACGCAATGCAACCATCGTCACAAGGCCCCTGGACTATGGCTGA
ATCTTGACATTTAGAATTTGAAGTTGTTTTTTAATGAAGATGGTAGCAACAGATTGTTGA
GACAGGCATCTCATTTTGTCAAGCTCTTAACCATTCAGTTATTTTGTCAGGGGCCCTTAA
CATTTTAAATATCAACCAATACATAGTTTTAGCTTCTGAAGATATTGGAAGATTGTATGT
AATACAGGTATCTATCTGTCGTGCTCTAGTAATTTATATATTCAGAAAGATTTTATAGCA
TTTCTGGATGTACTGCAGTAGCCAATATAAGCTGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               337-456, - strand, RNAz p=0.533637

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-456, - strand, RNAz p=0.533637

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-756, gnl|bosTau2|chr3 (8534338-8533574)
               

               
               1-756, gnl|Hg17|chr1 (151265879-151265091)
               

               
               1-756, gnl|Mm7|chr3 (89984537-89985279)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr3 (8534338-8533574)
               

               
               1-756, gnl|Hg17|chr1 (151265879-151265091)
               

               
               1-756, gnl|Mm7|chr3 (89984537-89985279)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               sag (0.182715)
               

               
               nco (0.161734)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               nco (0.161734)
               

               
               clu (0.119646)

	1-756, gnl\|bosTau2\|chr3 (8534338-8533574)
	1-756, gnl\|Hg17\|chr1 (151265879-151265091)
	1-756, gnl\|Mm7\|chr3 (89984537-89985279)