Non-Coding RNA Search

Ss1.1-Pig4-TMW8012L24.3

Sequence:


               
               TTTCTTTCTTTATAAAAAAATTTAAATAAATTCATATTATTTGACTACAGAAGAAATTGA
GAGATTTGGGATAAAATCACCTCCTCCAGTCTGATCAAGGAGGTGAAGCTCCCAGGGGTG
GGCAGGGAAGAGGTAGGAGCTAAAGGGCAGACTTTAAAAAGCAAAAAAAATGCTCCTTAT
AAACTCAGATGACTGTAGATGACTCTTGGTCATACTTCCTAAGAAGCAAATGAAGACAAA
TATCCAAGTGTTAACCTTTGGTCTGGAGTTGAGCTTGGATTGACTTTGAAAGCATTTTCA
TATTCCTTAGCAAAATAAAAGAATTGGGAGCAACAGAGACACCTGGTTATCAGGTACTTG
GTTTGAACATTTTGGAGAATAAAGTACTCGGTAATGGGGAAATGACATACATCTTTAAAC
TTGTTATGAAGAAAGCATGTAAAAGCAATTATGGAAAACCCTCCACTTAGGAAGACAGCT
TGGAAATGGAACTGCAATTGCCTTTTAAGGGACTGGTTTTGCAGATAAGTTAGTTTTGTA
AGATTTTAGGCTGTCATTTCACTTTCTGTACTGTAACCCCTGTTTTAAATGAATTTGCTG
TATGAAATAATACCATTATTGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTTCTTTATAAAAAAATTTAAATAAATTCATATTATTTGACTACAGAAGAAATTGA
GAGATTTGGGATAAAATCACCTCCTCCAGTCTGATCAAGGAGGTGAAGCTCCCAGGGGTG
GGCAGGGAAGAGGTAGGAGCTAAAGGGCAGACTTTAAAAAGCAAAAAAAATGCTCCTTAT
AAACTCAGATGACTGTAGATGACTCTTGGTCATACTTCCTAAGAAGCAAATGAAGACAAA
TATCCAAGTGTTAACCTTTGGTCTGGAGTTGAGCTTGGATTGACTTTGAAAGCATTTTCA
TATTCCTTAGCAAAATAAAAGAATTGGGAGCAACAGAGACACCTGGTTATCAGGTACTTG
GTTTGAACATTTTGGAGAATAAAGTACTCGGTAATGGGGAAATGACATACATCTTTAAAC
TTGTTATGAAGAAAGCATGTAAAAGCAATTATGGAAAACCCTCCACTTAGGAAGACAGCT
TGGAAATGGAACTGCAATTGCCTTTTAAGGGACTGGTTTTGCAGATAAGTTAGTTTTGTA
AGATTTTAGGCTGTCATTTCACTTTCTGTACTGTAACCCCTGTTTTAAATGAATTTGCTG
TATGAAATAATACCATTATTGATA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-621, gnl|bosTau2|chr6 (2353633-2354261)
               

               
               1-621, gnl|Hg17|chr4 (119989517-119990150)
               

               
               1-621, gnl|Mm7|chr3 (123207609-123206987)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr6 (2353633-2354261)
               

               
               1-621, gnl|Hg17|chr4 (119989517-119990150)
               

               
               1-621, gnl|Mm7|chr3 (123207609-123206987)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cbe (0.239234)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	1-621, gnl\|bosTau2\|chr6 (2353633-2354261)
	1-621, gnl\|Hg17\|chr4 (119989517-119990150)
	1-621, gnl\|Mm7\|chr3 (123207609-123206987)

	cbe (0.239234)
	mgm (0.180343)
	isp (0.150376)
	fat (0.147427)
	lnt (0.142308)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	pgl (0.118483)
	med (0.116252)
	nbm (0.0993246)