Non-Coding RNA Search

Ss1.1-Pig4-TMW8012M06.3

Sequence:


               
               GAAATGGGCAGCCAGGACGGGTCGCCGTTGCGGGAGACGCGCAAAGACCCGTTCTCTGCG
GCCGCTTCCGAGTGCTCCTGCCGCCAAGATGGGCTCACGGTCATCGTCACGGCCTGCCTC
ACCTTTGCCACGGGTGTCACTGTGGCGCTCATCATGCAGATCTATTTTGGGGACCCCCAG
ATATTTCATCAGGGCGCTGTGGTGACTGATGCTGCCCATTGCACGTCGCTGGGCATCGAG
GTGCTCAGTAAACAGGGATCTTCGGTGGATGCAGCTGTGGCAGCAGCCCTGTGTTTGGGA
ATCGTGGCTCCACACAGTTCAGGCCTGGGCGGTGGGGGTGTGATGCTGGTACATGACATC
CGAAGAAATGAGAGCCGCCTAATTGATTTCCGGGAGTCTGCACCAGGGGCTCTCAGAGAA
GAGGCCCTGCAGAGATCCTGGGAGACCAAGGTGGGGACCCTGGTGAGAAGGAGGGGGGTG
GGGGACAGCTTGTCCCTCCTCTGGGATACTTGGCCTGTGTCTCTGCCCTGTGCCGGCCCC
TGAAGGTGAGGAAAAGAGTTAAGCAAGATGTTCTTAAGCTATGAGGGAAACAGACAGCCC
CCAAAATAAAATCACCTGCCCGCCTTGCCCAGCCTGCGCTCTTGGTGGGGGTCCCCGGAA
TGGTGAAGGGGCTACATGAAGCTCACCAGCTCTATGGCAGGCTGCCATGGTCCCAAGTCC
TGGCCTTTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATGGGCAGCCAGGACGGGTCGCCGTTGCGGGAGACGCGCAAAGACCCGTTCTCTGCG
GCCGCTTCCGAGTGCTCCTGCCGCCAAGATGGGCTCACGGTCATCGTCACGGCCTGCCTC
ACCTTTGCCACGGGTGTCACTGTGGCGCTCATCATGCAGATCTATTTTGGGGACCCCCAG
ATATTTCATCAGGGCGCTGTGGTGACTGATGCTGCCCATTGCACGTCGCTGGGCATCGAG
GTGCTCAGTAAACAGGGATCTTCGGTGGATGCAGCTGTGGCAGCAGCCCTGTGTTTGGGA
ATCGTGGCTCCACACAGTTCAGGCCTGGGCGGTGGGGGTGTGATGCTGGTACATGACATC
CGAAGAAATGAGAGCCGCCTAATTGATTTCCGGGAGTCTGCACCAGGGGCTCTCAGAGAA
GAGGCCCTGCAGAGATCCTGGGAGACCAAGGTGGGGACCCTGGTGAGAAGGAGGGGGGTG
GGGGACAGCTTGTCCCTCCTCTGGGATACTTGGCCTGTGTCTCTGCCCTGTGCCGGCCCC
TGAAGGTGAGGAAAAGAGTTAAGCAAGATGTTCTTAAGCTATGAGGGAAACAGACAGCCC
CCAAAATAAAATCACCTGCCCGCCTTGCCCAGCCTGCGCTCTTGGTGGGGGTCCCCGGAA
TGGTGAAGGGGCTACATGAAGCTCACCAGCTCTATGGCAGGCTGCCATGGTCCCAAGTCC
TGGCCTTTGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21756757|dbj|BAC04950.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21756757|dbj|BAC04950.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               332-521, + strand, RNAz p=0.995674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               332-521, + strand, RNAz p=0.995674

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_178025, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_178025, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-180, gnl|bosTau2|chr13 (46674130-46674309)
               

               
               1-180, gnl|canFam2|chr24 (26888417-26888612)
               

               
               1-180, gnl|danRer3|chrNA (224004163-224003990)
               

               
               1-180, gnl|fr1|chrUn (147210598-147210770)
               

               
               1-180, gnl|galGal2|chr20 (393276-393089)
               

               
               1-180, gnl|hg17|chr20 (32914761-32914957)
               

               
               1-180, gnl|Hg17|chr20 (32914956-32914777)
               

               
               1-180, gnl|mm7|chr2 (155247168-155247364)
               

               
               1-180, gnl|Mm7|chr2 (155247363-155247184)
               

               
               1-180, gnl|monDom2|scaffold_6 (12195191-12194995)
               

               
               1-180, gnl|oryCun1|scaffold_177183 (56360-56161)
               

               
               1-180, gnl|panTro1|chr21 (34922084-34922280)
               

               
               1-180, gnl|rheMac2|chr10 (29697284-29697088)
               

               
               1-180, gnl|rn3|chr3 (145909444-145909640)
               

               
               1-180, gnl|tetNig1|chr9 (5382657-5382482)
               

               
               1-180, gnl|xenTro1|scaffold_35 (1262522-1262338)
               


               
               332-612, gnl|bosTau2|chr13 (46676210-46676490)
               

               
               332-612, gnl|Hg17|chr20 (32913027-32912746)
               

               
               332-612, gnl|Mm7|chr2 (155245680-155245389)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-180, gnl|bosTau2|chr13 (46674130-46674309)
               

               
               1-180, gnl|canFam2|chr24 (26888417-26888612)
               

               
               1-180, gnl|danRer3|chrNA (224004163-224003990)
               

               
               1-180, gnl|fr1|chrUn (147210598-147210770)
               

               
               1-180, gnl|galGal2|chr20 (393276-393089)
               

               
               1-180, gnl|hg17|chr20 (32914761-32914957)
               

               
               1-180, gnl|Hg17|chr20 (32914956-32914777)
               

               
               1-180, gnl|mm7|chr2 (155247168-155247364)
               

               
               1-180, gnl|Mm7|chr2 (155247363-155247184)
               

               
               1-180, gnl|monDom2|scaffold_6 (12195191-12194995)
               

               
               1-180, gnl|oryCun1|scaffold_177183 (56360-56161)
               

               
               1-180, gnl|panTro1|chr21 (34922084-34922280)
               

               
               1-180, gnl|rheMac2|chr10 (29697284-29697088)
               

               
               1-180, gnl|rn3|chr3 (145909444-145909640)
               

               
               1-180, gnl|tetNig1|chr9 (5382657-5382482)
               

               
               1-180, gnl|xenTro1|scaffold_35 (1262522-1262338)
               


               
               332-612, gnl|bosTau2|chr13 (46676210-46676490)
               

               
               332-612, gnl|Hg17|chr20 (32913027-32912746)
               

               
               332-612, gnl|Mm7|chr2 (155245680-155245389)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-180, gnl\|bosTau2\|chr13 (46674130-46674309)
	1-180, gnl\|canFam2\|chr24 (26888417-26888612)
	1-180, gnl\|danRer3\|chrNA (224004163-224003990)
	1-180, gnl\|fr1\|chrUn (147210598-147210770)
	1-180, gnl\|galGal2\|chr20 (393276-393089)
	1-180, gnl\|hg17\|chr20 (32914761-32914957)
	1-180, gnl\|Hg17\|chr20 (32914956-32914777)
	1-180, gnl\|mm7\|chr2 (155247168-155247364)
	1-180, gnl\|Mm7\|chr2 (155247363-155247184)
	1-180, gnl\|monDom2\|scaffold_6 (12195191-12194995)
	1-180, gnl\|oryCun1\|scaffold_177183 (56360-56161)
	1-180, gnl\|panTro1\|chr21 (34922084-34922280)
	1-180, gnl\|rheMac2\|chr10 (29697284-29697088)
	1-180, gnl\|rn3\|chr3 (145909444-145909640)
	1-180, gnl\|tetNig1\|chr9 (5382657-5382482)
	1-180, gnl\|xenTro1\|scaffold_35 (1262522-1262338)

	332-612, gnl\|bosTau2\|chr13 (46676210-46676490)
	332-612, gnl\|Hg17\|chr20 (32913027-32912746)
	332-612, gnl\|Mm7\|chr2 (155245680-155245389)