Ss1.1-Pig4-TMW8012M10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGTGAGTGAGCCGGTACCGGAGGAGACGTGCGGTGTCTTCGATCTAGGCTTCCCCTGC TAACATGTCGCAAGGGATCCTCTCTCCACCGGCCGGCTTGTTGTCGGATGAGGAAGTCGT AGTCTCCCCCATGTTTGAGTCCACTGCTGCAGATTTGGGGTCTGTGGTGCGCAAGGAACT GCTGTCAGACTGCTCTGTCATCTCCACCTCCCTGGACGACAAGCAGCAGGTTCCATCTGA AGGAAGCATGGAGAAAGTCAAAGTATACCTGAGGGTCAGGCCCTTTTTACCTTCAGAGTT AGAACGACAGGAGGATCAGGGTTGTGTCCGTATTGAGAATATGGAGACCCTTGCTCTACA GGCACCCAAGGACTCTTTTGCCCAGAAGAGCAACGAGAGAGGGATTGGACAAGCAACACA CAGATTCACCTTTTCCCAGATCTTTGGACCAGAAGTGGGACAGGCACCTTTCTTCAACCT GACTGTAAAGGAGATGGTAAAGGATGTACTCAAAGGACAGAACTGGCTATAACATGATGC TGGTAAAACTGGACCTGCGGAAGAAAGCGGCGTGCATCGCAGAACAGTATCATACTGTGC TAAAACTCCAAGGCCAGGCTTCTACCAAAAAGCGCCTGGGTGCCAACCAGGAAAATCAGC TACCAAACCAACAGCCCCCAGGGAAGAAACCATTTCTTCGAAACTTACTTCCCCGAACAC CCACCTGTCAAAGTTCAACAGACTGCAGCCCTTATGCCCGGATCCTGCGCTCACGGCGCT CCCCTTTACTCAAATCTGGGCCTTTCGGCAAAAAATACTAAAATTGTGAGAAGGAGAAAG CAGTCATTGCTCTGAGCTTAAGAAATAGGCCTCTTTTGGAGTTCCCTGGTGGCCTGGCAG TTAAGGATTTGGCACTGTCACTGCTGTGGCTGGGGTTCAATCTCTGGCCTAGGAACTTCT GCATGCTGTAGGTGTGGCCTAAGAAAGAAAAATAGGTCTCTTTTAAGCTTTACCATATAT ATACTTGGAACTCTTTTCATAATACAATATTCGGACACTAGTTATTTTTCACCCTTTTTG TATTATAATCACTTATGTAATCTTATGCTTTTTTACCTATATCATTTCTATGCACACAAA AAAGTTATATTAAATAAAGATATTATTCACATTTTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGTGAGTGAGCCGGTACCGGAGGAGACGTGCGGTGTCTTCGATCTAGGCTTCCCCTGC TAACATGTCGCAAGGGATCCTCTCTCCACCGGCCGGCTTGTTGTCGGATGAGGAAGTCGT AGTCTCCCCCATGTTTGAGTCCACTGCTGCAGATTTGGGGTCTGTGGTGCGCAAGGAACT GCTGTCAGACTGCTCTGTCATCTCCACCTCCCTGGACGACAAGCAGCAGGTTCCATCTGA AGGAAGCATGGAGAAAGTCAAAGTATACCTGAGGGTCAGGCCCTTTTTACCTTCAGAGTT AGAACGACAGGAGGATCAGGGTTGTGTCCGTATTGAGAATATGGAGACCCTTGCTCTACA GGCACCCAAGGACTCTTTTGCCCAGAAGAGCAACGAGAGAGGGATTGGACAAGCAACACA CAGATTCACCTTTTCCCAGATCTTTGGACCAGAAGTGGGACAGGCACCTTTCTTCAACCT GACTGTAAAGGAGATGGTAAAGGATGTACTCAAAGGACAGAACTGGCTATAACATGATGC TGGTAAAACTGGACCTGCGGAAGAAAGCGGCGTGCATCGCAGAACAGTATCATACTGTGC TAAAACTCCAAGGCCAGGCTTCTACCAAAAAGCGCCTGGGTGCCAACCAGGAAAATCAGC TACCAAACCAACAGCCCCCAGGGAAGAAACCATTTCTTCGAAACTTACTTCCCCGAACAC CCACCTGTCAAAGTTCAACAGACTGCAGCCCTTATGCCCGGATCCTGCGCTCACGGCGCT CCCCTTTACTCAAATCTGGGCCTTTCGGCAAAAAATACTAAAATTGTGAGAAGGAGAAAG CAGTCATTGCTCTGAGCTTAAGAAATAGGCCTCTTTTGGAGTTCCCTGGTGGCCTGGCAG TTAAGGATTTGGCACTGTCACTGCTGTGGCTGGGGTTCAATCTCTGGCCTAGGAACTTCT GCATGCTGTAGGTGTGGCCTAAGAAAGAAAAATAGGTCTCTTTTAAGCTTTACCATATAT ATACTTGGAACTCTTTTCATAATACAATATTCGGACACTAGTTATTTTTCACCCTTTTTG TATTATAATCACTTATGTAATCTTATGCTTTTTTACCTATATCATTTCTATGCACACAAA AAAGTTATATTAAATAAAGATATTATTCACATTTTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 529-727, - strand, RNAz p=0.851899 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 529-727, - strand, RNAz p=0.851899 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 40-226, gnl|bosTau2|chr7 (34723055-34723241) | |
| 40-226, gnl|Hg17|chr5 (137543244-137543430) | |
| 40-226, gnl|Mm7|chr18 (35000919-35001106) | |
| 316-439, gnl|bosTau2|chr7 (34724761-34724884) | |
| 316-439, gnl|canFam2|chr11 (28845259-28845399) | |
| 316-439, gnl|danRer3|chr21 (26612834-26612969) | |
| 316-439, gnl|dasNov1|scaffold_85439 (4355-4495) | |
| 316-439, gnl|echTel1|scaffold_320408 (81060-80921) | |
| 316-439, gnl|fr1|chrUn (4701994-4701860) | |
| 316-439, gnl|galGal2|chr13 (9177230-9177369) | |
| 316-439, gnl|hg17|chr5 (137545186-137545326) | |
| 316-439, gnl|Hg17|chr5 (137545193-137545316) | |
| 316-439, gnl|loxAfr1|scaffold_61318 (8759-8619) | |
| 316-439, gnl|mm7|chr18 (35002349-35002489) | |
| 316-439, gnl|Mm7|chr18 (35002356-35002479) | |
| 316-439, gnl|monDom2|scaffold_6 (71322901-71322763) | |
| 316-439, gnl|oryCun1|scaffold_170344 (176-316) | |
| 316-439, gnl|panTro1|chr4 (144147632-144147772) | |
| 316-439, gnl|rheMac2|chr6 (134587689-134587829) | |
| 316-439, gnl|rn3|chr18 (27129104-27129244) | |
| 316-439, gnl|tetNig1|chr7 (4282817-4282942) | |
| 316-439, gnl|xenTro1|scaffold_230 (1399109-1398972) | |
| 529-833, gnl|bosTau2|chr7 (34730398-34730702) | |
| 529-833, gnl|Hg17|chr5 (137550709-137551013) | |
| 529-833, gnl|Mm7|chr18 (35007791-35008092) | |
| 990-1176, gnl|bosTau2|chr7 (34730742-34730931) | |
| 990-1176, gnl|canFam2|chr11 (28851083-28850733) | |
| 990-1176, gnl|dasNov1|scaffold_11899 (16149-16504) | |
| 990-1176, gnl|echTel1|scaffold_320408 (72777-73139) | |
| 990-1176, gnl|hg17|chr16 (72033864-72034226) | |
| 990-1176, gnl|Hg17|chr5 (137551062-137551254) | |
| 990-1176, gnl|loxAfr1|scaffold_61318 (2359-2710) | |
| 990-1176, gnl|mm7|chr18 (35008293-35007972) | |
| 990-1176, gnl|oryCun1|scaffold_170344 (6370-5996) | |
| 990-1176, gnl|panTro1|chr18 (66407347-66407711) | |
| 990-1176, gnl|rheMac2|chr20 (69202250-69201884) | |
| 990-1176, gnl|rn3|chr18 (27135201-27134892) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-226, gnl|bosTau2|chr7 (34723055-34723241) | |
| 40-226, gnl|Hg17|chr5 (137543244-137543430) | |
| 40-226, gnl|Mm7|chr18 (35000919-35001106) | |
| 316-439, gnl|bosTau2|chr7 (34724761-34724884) | |
| 316-439, gnl|canFam2|chr11 (28845259-28845399) | |
| 316-439, gnl|danRer3|chr21 (26612834-26612969) | |
| 316-439, gnl|dasNov1|scaffold_85439 (4355-4495) | |
| 316-439, gnl|echTel1|scaffold_320408 (81060-80921) | |
| 316-439, gnl|fr1|chrUn (4701994-4701860) | |
| 316-439, gnl|galGal2|chr13 (9177230-9177369) | |
| 316-439, gnl|hg17|chr5 (137545186-137545326) | |
| 316-439, gnl|Hg17|chr5 (137545193-137545316) | |
| 316-439, gnl|loxAfr1|scaffold_61318 (8759-8619) | |
| 316-439, gnl|mm7|chr18 (35002349-35002489) | |
| 316-439, gnl|Mm7|chr18 (35002356-35002479) | |
| 316-439, gnl|monDom2|scaffold_6 (71322901-71322763) | |
| 316-439, gnl|oryCun1|scaffold_170344 (176-316) | |
| 316-439, gnl|panTro1|chr4 (144147632-144147772) | |
| 316-439, gnl|rheMac2|chr6 (134587689-134587829) | |
| 316-439, gnl|rn3|chr18 (27129104-27129244) | |
| 316-439, gnl|tetNig1|chr7 (4282817-4282942) | |
| 316-439, gnl|xenTro1|scaffold_230 (1399109-1398972) | |
| 529-833, gnl|bosTau2|chr7 (34730398-34730702) | |
| 529-833, gnl|Hg17|chr5 (137550709-137551013) | |
| 529-833, gnl|Mm7|chr18 (35007791-35008092) | |
| 990-1176, gnl|bosTau2|chr7 (34730742-34730931) | |
| 990-1176, gnl|canFam2|chr11 (28851083-28850733) | |
| 990-1176, gnl|dasNov1|scaffold_11899 (16149-16504) | |
| 990-1176, gnl|echTel1|scaffold_320408 (72777-73139) | |
| 990-1176, gnl|hg17|chr16 (72033864-72034226) | |
| 990-1176, gnl|Hg17|chr5 (137551062-137551254) | |
| 990-1176, gnl|loxAfr1|scaffold_61318 (2359-2710) | |
| 990-1176, gnl|mm7|chr18 (35008293-35007972) | |
| 990-1176, gnl|oryCun1|scaffold_170344 (6370-5996) | |
| 990-1176, gnl|panTro1|chr18 (66407347-66407711) | |
| 990-1176, gnl|rheMac2|chr20 (69202250-69201884) | |
| 990-1176, gnl|rn3|chr18 (27135201-27134892) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fce (0.271592) | |
| cty (0.20816) | |
| eje (0.197668) | |
| rec (0.17307) | |
| lin (0.145603) | |
| thg (0.126791) | |
| med (0.116252) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| cty (0.20816) | |
| eje (0.197668) | |
| rec (0.17307) | |
| lin (0.145603) | |
| thg (0.126791) | |
| med (0.116252) |