Non-Coding RNA Search

Ss1.1-Pig4-TMW8012M17.3

Sequence:


               
               TTACAGGGAGAGAGACGGAATGTTATGTTTGGTGTTGATGTTATGGAGTGACAAAATGGC
TTTGCTGGCACTCAAAGCTCCTCACTTATCTATTTTCTGAGATTTTAAGAGTTATAAGGA
TGACTATAAAACTAATCTTTCTTAACATAAACACTAGATGAGTGTTAGAGCCTCAAAGTA
GCTAAGTTAAGGCTTCCCACTAATTCCAATGATACAGCTTTTACACAAAACATTTTTAGA
ACTTCAGTTTTCAAATCCATGTTTGAATCTACATTGATTCTTTCAGTATACTTAATGATG
ATCATTTTTACCCTTTTAGAATTTAGTTGATTTGGGGAGGAAAATTTATTCAGAACAGTA
TCAGTGGTGAAAAGGAGGGACAGCTTTTGCCTATTTAAAGTGCAGAAGTGGAACATAGAG
AATAATACTGATGTTTATGACTAACTCAAAAAGAAAATTCCAAAATATGAATTTGAATAA
GCAGCATTACTGGTTTTAAGTGCCTAGCAAAGGAGCTGAATCTGACAAACAAAACTGATA
TTTATGTTTTTAAATACGCTCTTTAAGTCACACCTTAAATAAAGTAACATATCACATCCC
AATATTTGGGGAATATTATTTCTAACTACCATCACTTACCAGATTTTATCATTAAATTTA
AAGTTCTGTGCTGTGGTATCTGTGTTGAAATTCAGACCATTTAAAATGTGACAGATGAAC
TTCATGCAAGTTGGCAACAGCTCTGGTACTAAAAATTGTGGTGGCTTCTTATGTTTACAT
GACCTGCTTAGTATCGAATCCCTATTCCAAGAGGATCTTCCCAAGAAGACTGCAGTCATC
ATTTACCTTTAACGTCTTCAACCTGTGACTTCAGATTTTTAAAGGGCTTTGTGTGAACTA
TGATATTACAGTTTTTCTAAGCATTTTAAGAAGGATAAAATTATACATTTATGTACTAAT
TTTCTTCAGAAAAATAAGCCAGAAAAAGTTGGTGGTATTCATTAGGTTTTAACTGGATGG
AGCAGTTCCTCATAATATCAATTGTATAGTTAGGAAATAAAACACTAACTTAATGTGTAT
TCAGTTTAAATGGTTATGTATTTTTTAATTGCTGAGAAAAATAAACAACTTTGTATATTT
GAAGTTTTCTTCCAACAGCTTTTCTTCTTCAACATCTTAATGTGTTTTCCTTACCAGGAA
AGGAAGTTGGCAAAAAAACAACCTTCTAGCACAAACACGTTTTTTTAATGAATAATAGTA
GCCTAAAACTTAATATTTTTATAGAGTATTATTGTTTTGTGGATAATTGAAATAAAAATT
CTCATTGAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAGGGAGAGAGACGGAATGTTATGTTTGGTGTTGATGTTATGGAGTGACAAAATGGC
TTTGCTGGCACTCAAAGCTCCTCACTTATCTATTTTCTGAGATTTTAAGAGTTATAAGGA
TGACTATAAAACTAATCTTTCTTAACATAAACACTAGATGAGTGTTAGAGCCTCAAAGTA
GCTAAGTTAAGGCTTCCCACTAATTCCAATGATACAGCTTTTACACAAAACATTTTTAGA
ACTTCAGTTTTCAAATCCATGTTTGAATCTACATTGATTCTTTCAGTATACTTAATGATG
ATCATTTTTACCCTTTTAGAATTTAGTTGATTTGGGGAGGAAAATTTATTCAGAACAGTA
TCAGTGGTGAAAAGGAGGGACAGCTTTTGCCTATTTAAAGTGCAGAAGTGGAACATAGAG
AATAATACTGATGTTTATGACTAACTCAAAAAGAAAATTCCAAAATATGAATTTGAATAA
GCAGCATTACTGGTTTTAAGTGCCTAGCAAAGGAGCTGAATCTGACAAACAAAACTGATA
TTTATGTTTTTAAATACGCTCTTTAAGTCACACCTTAAATAAAGTAACATATCACATCCC
AATATTTGGGGAATATTATTTCTAACTACCATCACTTACCAGATTTTATCATTAAATTTA
AAGTTCTGTGCTGTGGTATCTGTGTTGAAATTCAGACCATTTAAAATGTGACAGATGAAC
TTCATGCAAGTTGGCAACAGCTCTGGTACTAAAAATTGTGGTGGCTTCTTATGTTTACAT
GACCTGCTTAGTATCGAATCCCTATTCCAAGAGGATCTTCCCAAGAAGACTGCAGTCATC
ATTTACCTTTAACGTCTTCAACCTGTGACTTCAGATTTTTAAAGGGCTTTGTGTGAACTA
TGATATTACAGTTTTTCTAAGCATTTTAAGAAGGATAAAATTATACATTTATGTACTAAT
TTTCTTCAGAAAAATAAGCCAGAAAAAGTTGGTGGTATTCATTAGGTTTTAACTGGATGG
AGCAGTTCCTCATAATATCAATTGTATAGTTAGGAAATAAAACACTAACTTAATGTGTAT
TCAGTTTAAATGGTTATGTATTTTTTAATTGCTGAGAAAAATAAACAACTTTGTATATTT
GAAGTTTTCTTCCAACAGCTTTTCTTCTTCAACATCTTAATGTGTTTTCCTTACCAGGAA
AGGAAGTTGGCAAAAAAACAACCTTCTAGCACAAACACGTTTTTTTAATGAATAATAGTA
GCCTAAAACTTAATATTTTTATAGAGTATTATTGTTTTGTGGATAATTGAAATAAAAATT
CTCATTGAATGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1331, gnl|bosTau2|chr24 (26023393-26022066)
               

               
               1-1331, gnl|Hg17|chr18 (713385-711751)
               

               
               1-1331, gnl|Mm7|chr5 (31720013-31721274)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1331, gnl|bosTau2|chr24 (26023393-26022066)
               

               
               1-1331, gnl|Hg17|chr18 (713385-711751)
               

               
               1-1331, gnl|Mm7|chr5 (31720013-31721274)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               lin (0.436808)
               

               
               amn (0.417711)
               

               
               duo (0.345602)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               duo (0.345602)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	1-1331, gnl\|bosTau2\|chr24 (26023393-26022066)
	1-1331, gnl\|Hg17\|chr18 (713385-711751)
	1-1331, gnl\|Mm7\|chr5 (31720013-31721274)

	lin (0.436808)
	amn (0.417711)
	duo (0.345602)
	liv (0.292569)
	kid (0.259471)
	mgp (0.230681)
	tes (0.207814)
	eje (0.197668)
	sag (0.182715)
	mgm (0.180343)
	sin (0.174948)
	eye (0.170503)
	mga (0.160205)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	lyg (0.133103)
	ova (0.129132)
	ese (0.126502)
	eru (0.120048)
	cty (0.10408)