Ss1.1-Pig4-TMW8012N04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGGGCGTCAGCAGGATCCTGGCCCACTGGGCCTGCTACAAGGTACAACAGAAGGATG TGTCTGATGAGGATGTTGCTCGGGCCATTAACCAAAAGCTGGGAGACACGCCTGGCGTCT CTTACTCTGACATTGCTGCACGAGCCTATGGCTGTGGCCGCACGGAGCTGGCTATCAAGC TGCTGGAGTATGAGCCACGCTCTGGGGAGCAGGTACCCCTTCTCCTAAAGATGAAGAGGA GCAAACTGGCACTAAGCAAGGCCATCGAGAGCGGGGACACTGACCTGGTGTTCACGGTGC TGCTGCACCTGAAGAATGAGCTGAACCGAGGAGACTTTTTCATGACACTTAGGAATCAGC CCATGGCCCTGAGTTTATACCGACAGTTCTGTAAACATCAGGAGTTGGAGACGCTGAAGG ACCTTTATAACCAGGATGACAACCACCAGGAGCTGGGCAGCTTCCACATCCGAGCCAGCT ACACGGCAGAGGAGCATATCGAGGGGCGAGTTGCAGCTCTGCAGAAGGCAGCCGAAGCCT TCAACAAGGCCAAGAACGACTTTGCAGCCAAGGCCACAGAGGATCAAATGCGGCTCCTGC GACTGCAGCGATGTCTAGAAGACGAGCTAGGGGGCCGGTTCTTAGACCTGTCTGTACACG ACACAGTCACCACCCTCATCCTTGGTGGCCACAACAAGCGTGCAGAGCAGGTGGCACGTG ACTTCCGCATCCCTGACAAGAGGCTCTGGTGGCTGAAGCTAACCGCCCTGGCAGATCTGG AAGACTGGGAGGAGCTAGAGAAATTTTCTAAGAGCAAGAAATCCCCCATCGGCTACCTGC CCTTTGTGGAAATCTGCATGAAGCAACACAACAAATATGAGGCCAAGAAGTATGCCTCCC GCGTGGGTCCTGAGCAGAAGGTCAAGGCCTTGCTTCTAGTTGGGGATGTGGCTCAGGCTG CAGACGTGGCCATCGAGCACCGGAACGAGGCAGAGATGAGCCTCGTGTTGTCCCACTGCA CCGGAGCCACAGACGGTGCCACGGTGGACAAGATTCAGCGGGCCCGGGCACAAGCCCAAA AGAAGTGAGGAGCCCACCTGCTCGTCTCCCCAAGCCCTGATCCTGGCAGAAATGTCTCTG CTCATCTAGCTCCGACCCCAGAGCAAAGCTGAAGAGCTGGGGTGGGAGCCAGTTCTGATT GTAAATAAAGTTGGAATATTTGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGGGCGTCAGCAGGATCCTGGCCCACTGGGCCTGCTACAAGGTACAACAGAAGGATG TGTCTGATGAGGATGTTGCTCGGGCCATTAACCAAAAGCTGGGAGACACGCCTGGCGTCT CTTACTCTGACATTGCTGCACGAGCCTATGGCTGTGGCCGCACGGAGCTGGCTATCAAGC TGCTGGAGTATGAGCCACGCTCTGGGGAGCAGGTACCCCTTCTCCTAAAGATGAAGAGGA GCAAACTGGCACTAAGCAAGGCCATCGAGAGCGGGGACACTGACCTGGTGTTCACGGTGC TGCTGCACCTGAAGAATGAGCTGAACCGAGGAGACTTTTTCATGACACTTAGGAATCAGC CCATGGCCCTGAGTTTATACCGACAGTTCTGTAAACATCAGGAGTTGGAGACGCTGAAGG ACCTTTATAACCAGGATGACAACCACCAGGAGCTGGGCAGCTTCCACATCCGAGCCAGCT ACACGGCAGAGGAGCATATCGAGGGGCGAGTTGCAGCTCTGCAGAAGGCAGCCGAAGCCT TCAACAAGGCCAAGAACGACTTTGCAGCCAAGGCCACAGAGGATCAAATGCGGCTCCTGC GACTGCAGCGATGTCTAGAAGACGAGCTAGGGGGCCGGTTCTTAGACCTGTCTGTACACG ACACAGTCACCACCCTCATCCTTGGTGGCCACAACAAGCGTGCAGAGCAGGTGGCACGTG ACTTCCGCATCCCTGACAAGAGGCTCTGGTGGCTGAAGCTAACCGCCCTGGCAGATCTGG AAGACTGGGAGGAGCTAGAGAAATTTTCTAAGAGCAAGAAATCCCCCATCGGCTACCTGC CCTTTGTGGAAATCTGCATGAAGCAACACAACAAATATGAGGCCAAGAAGTATGCCTCCC GCGTGGGTCCTGAGCAGAAGGTCAAGGCCTTGCTTCTAGTTGGGGATGTGGCTCAGGCTG CAGACGTGGCCATCGAGCACCGGAACGAGGCAGAGATGAGCCTCGTGTTGTCCCACTGCA CCGGAGCCACAGACGGTGCCACGGTGGACAAGATTCAGCGGGCCCGGGCACAAGCCCAAA AGAAGTGAGGAGCCCACCTGCTCGTCTCCCCAAGCCCTGATCCTGGCAGAAATGTCTCTG CTCATCTAGCTCCGACCCCAGAGCAAAGCTGAAGAGCTGGGGTGGGAGCCAGTTCTGATT GTAAATAAAGTTGGAATATTTGAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 43-205, gnl|bosTau2|chr13 (41432070-41432230) | |
| 43-205, gnl|Hg17|chr20 (2792593-2792753) | |
| 43-205, gnl|Mm7|chr2 (130182016-130182178) | |
| 384-494, gnl|bosTau2|chr13 (41432675-41432785) | |
| 384-494, gnl|canFam2|chr24 (21400666-21400557) | |
| 384-494, gnl|danRer3|chr6 (24738935-24738837) | |
| 384-494, gnl|dasNov1|scaffold_50589 (3619-3511) | |
| 384-494, gnl|fr1|chrUn (227919506-227919603) | |
| 384-494, gnl|galGal2|chrUn (159891031-159891137) | |
| 384-494, gnl|hg17|chr20 (2793191-2793300) | |
| 384-494, gnl|Hg17|chr20 (2793190-2793300) | |
| 384-494, gnl|loxAfr1|scaffold_29224 (20366-20257) | |
| 384-494, gnl|mm7|chr2 (130182645-130182754) | |
| 384-494, gnl|Mm7|chr2 (130182644-130182754) | |
| 384-494, gnl|monDom2|scaffold_10 (48688571-48688680) | |
| 384-494, gnl|oryCun1|scaffold_192983 (10500-10609) | |
| 384-494, gnl|panTro1|chr21 (2770432-2770541) | |
| 384-494, gnl|rheMac2|chr10 (36174013-36174122) | |
| 384-494, gnl|rn3|chr3 (117962490-117962599) | |
| 384-494, gnl|tetNig1|chr3 (34370-34467) | |
| 384-494, gnl|xenTro1|scaffold_1305 (126144-126253) | |
| 568-743, gnl|bosTau2|chr13 (41433262-41433437) | |
| 568-743, gnl|canFam2|chr24 (21400063-21399949) | |
| 568-743, gnl|danRer3|chr6 (24738120-24738006) | |
| 568-743, gnl|dasNov1|scaffold_50589 (3124-3010) | |
| 568-743, gnl|fr1|chrUn (227920562-227920674) | |
| 568-743, gnl|galGal2|chrUn (159891646-159891760) | |
| 568-743, gnl|hg17|chr20 (2793790-2793904) | |
| 568-743, gnl|Hg17|chr20 (2793789-2793964) | |
| 568-743, gnl|loxAfr1|scaffold_29224 (19773-19659) | |
| 568-743, gnl|mm7|chr2 (130183184-130183298) | |
| 568-743, gnl|Mm7|chr2 (130183183-130183358) | |
| 568-743, gnl|monDom2|scaffold_10 (48689353-48689467) | |
| 568-743, gnl|oryCun1|scaffold_192983 (11097-11211) | |
| 568-743, gnl|panTro1|chr21 (2771026-2771140) | |
| 568-743, gnl|rheMac2|chr10 (36174600-36174714) | |
| 568-743, gnl|rn3|chr3 (117963010-117963124) | |
| 568-743, gnl|tetNig1|chr3 (36667-36757) | |
| 568-743, gnl|xenTro1|scaffold_1305 (126328-126442) | |
| 943-1221, gnl|bosTau2|chr13 (41434577-41434858) | |
| 943-1221, gnl|Hg17|chr20 (2795075-2795373) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-205, gnl|bosTau2|chr13 (41432070-41432230) | |
| 43-205, gnl|Hg17|chr20 (2792593-2792753) | |
| 43-205, gnl|Mm7|chr2 (130182016-130182178) | |
| 384-494, gnl|bosTau2|chr13 (41432675-41432785) | |
| 384-494, gnl|canFam2|chr24 (21400666-21400557) | |
| 384-494, gnl|danRer3|chr6 (24738935-24738837) | |
| 384-494, gnl|dasNov1|scaffold_50589 (3619-3511) | |
| 384-494, gnl|fr1|chrUn (227919506-227919603) | |
| 384-494, gnl|galGal2|chrUn (159891031-159891137) | |
| 384-494, gnl|hg17|chr20 (2793191-2793300) | |
| 384-494, gnl|Hg17|chr20 (2793190-2793300) | |
| 384-494, gnl|loxAfr1|scaffold_29224 (20366-20257) | |
| 384-494, gnl|mm7|chr2 (130182645-130182754) | |
| 384-494, gnl|Mm7|chr2 (130182644-130182754) | |
| 384-494, gnl|monDom2|scaffold_10 (48688571-48688680) | |
| 384-494, gnl|oryCun1|scaffold_192983 (10500-10609) | |
| 384-494, gnl|panTro1|chr21 (2770432-2770541) | |
| 384-494, gnl|rheMac2|chr10 (36174013-36174122) | |
| 384-494, gnl|rn3|chr3 (117962490-117962599) | |
| 384-494, gnl|tetNig1|chr3 (34370-34467) | |
| 384-494, gnl|xenTro1|scaffold_1305 (126144-126253) | |
| 568-743, gnl|bosTau2|chr13 (41433262-41433437) | |
| 568-743, gnl|canFam2|chr24 (21400063-21399949) | |
| 568-743, gnl|danRer3|chr6 (24738120-24738006) | |
| 568-743, gnl|dasNov1|scaffold_50589 (3124-3010) | |
| 568-743, gnl|fr1|chrUn (227920562-227920674) | |
| 568-743, gnl|galGal2|chrUn (159891646-159891760) | |
| 568-743, gnl|hg17|chr20 (2793790-2793904) | |
| 568-743, gnl|Hg17|chr20 (2793789-2793964) | |
| 568-743, gnl|loxAfr1|scaffold_29224 (19773-19659) | |
| 568-743, gnl|mm7|chr2 (130183184-130183298) | |
| 568-743, gnl|Mm7|chr2 (130183183-130183358) | |
| 568-743, gnl|monDom2|scaffold_10 (48689353-48689467) | |
| 568-743, gnl|oryCun1|scaffold_192983 (11097-11211) | |
| 568-743, gnl|panTro1|chr21 (2771026-2771140) | |
| 568-743, gnl|rheMac2|chr10 (36174600-36174714) | |
| 568-743, gnl|rn3|chr3 (117963010-117963124) | |
| 568-743, gnl|tetNig1|chr3 (36667-36757) | |
| 568-743, gnl|xenTro1|scaffold_1305 (126328-126442) | |
| 943-1221, gnl|bosTau2|chr13 (41434577-41434858) | |
| 943-1221, gnl|Hg17|chr20 (2795075-2795373) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cje (0.330469) | |
| eru (0.240096) | |
| nms (0.213858) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| che (0.136314) | |
| ste (0.135208) | |
| thg (0.126791) | |
| eep (0.122564) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| eru (0.240096) | |
| nms (0.213858) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| che (0.136314) | |
| ste (0.135208) | |
| thg (0.126791) | |
| eep (0.122564) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) |