Non-Coding RNA Search

Ss1.1-Pig4-TMW8012N07.3

Sequence:


               
               GGAACATGTCAACTAACATAACCCATTGTCGGTTTCTCCATGTATTCCTCAAAAGAATGT
CAAAGTAAATGTATTAGAAATACAGTATCCAGCCTGCTGGTCCTTCCCAGAGACACCGAG
ACCTCTGTGGCCTGTGATCGCGTTTGGTGCTCCACGGCGAAAAGAAGGGTGGGACCTTTC
CCACGTTAGCTAGAAGGGCGGAAGGCTTTCAGGCTAGTGCGGTCAGCTTCTCCACTGTCC
CTCACCAATCTGGCTTGTCAATTTGAATTTGTCACTCCATCGAAATGTACGTCCCTTACC
CTCCTTTGTGCCTACAGCTGCTAAGGAGGTCTTTGCCACCCCTACGAGATGAGCCAGAGC
TGGTGACACAGGTGGGTGATGGACGGATCGTTGAGGGGATGGATGCTGTACTTGCGTAGC
AAGAAGTCCGAGCAGAAGGGCATCGCGCCGGGGCAGAGCAGGGTGGACCGAGGAAGCCAG
CCAGTCCTGCTGGGCTAGGGCTTTCCGGGCAGTACGTTCCCGGAGCTTCAGTCCCTATGC
ATGTTCATGTGCCGTGTGAAACTCCACTGCGAAGCCAGATACTGACGGGGTCATCCACCC
ACCTGTCTGCATTTCTACAGTGTCCTTAATGTGGGTCACCAAGCATTGATCGAAGGGATG
CCACAAAAATATTTGCCCAGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACATGTCAACTAACATAACCCATTGTCGGTTTCTCCATGTATTCCTCAAAAGAATGT
CAAAGTAAATGTATTAGAAATACAGTATCCAGCCTGCTGGTCCTTCCCAGAGACACCGAG
ACCTCTGTGGCCTGTGATCGCGTTTGGTGCTCCACGGCGAAAAGAAGGGTGGGACCTTTC
CCACGTTAGCTAGAAGGGCGGAAGGCTTTCAGGCTAGTGCGGTCAGCTTCTCCACTGTCC
CTCACCAATCTGGCTTGTCAATTTGAATTTGTCACTCCATCGAAATGTACGTCCCTTACC
CTCCTTTGTGCCTACAGCTGCTAAGGAGGTCTTTGCCACCCCTACGAGATGAGCCAGAGC
TGGTGACACAGGTGGGTGATGGACGGATCGTTGAGGGGATGGATGCTGTACTTGCGTAGC
AAGAAGTCCGAGCAGAAGGGCATCGCGCCGGGGCAGAGCAGGGTGGACCGAGGAAGCCAG
CCAGTCCTGCTGGGCTAGGGCTTTCCGGGCAGTACGTTCCCGGAGCTTCAGTCCCTATGC
ATGTTCATGTGCCGTGTGAAACTCCACTGCGAAGCCAGATACTGACGGGGTCATCCACCC
ACCTGTCTGCATTTCTACAGTGTCCTTAATGTGGGTCACCAAGCATTGATCGAAGGGATG
CCACAAAAATATTTGCCCAGTAAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr6 (30040650-30039959)
               

               
               1-684, gnl|Hg17|chr4 (38521740-38522422)
               

               
               1-684, gnl|Mm7|chr5 (64184281-64184951)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr6 (30040650-30039959)
               

               
               1-684, gnl|Hg17|chr4 (38521740-38522422)
               

               
               1-684, gnl|Mm7|chr5 (64184281-64184951)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               eep (0.122564)

	1-684, gnl\|bosTau2\|chr6 (30040650-30039959)
	1-684, gnl\|Hg17\|chr4 (38521740-38522422)
	1-684, gnl\|Mm7\|chr5 (64184281-64184951)