Non-Coding RNA Search

Ss1.1-Pig4-TMW8012O05.5

Sequence:


               
               CCTGGAGCAGCTATTCCTTTTAAATCTCTCATTTCTGGACTTGAAAAACCTATCCCGATG
CTCACACCCTTGAGATGAGGCCTGGAGGGGGGAGCCATCAGAGTAGGGCTGCTGGGTGAG
GGCCTAGAAATGTGGAACCCTGGAGTGGAAGGTTCTAGAAATGCAGTATCCTGTGCTTCA
GTGAACTCTTACTACCGAACAGGAACAACAAGAAAAAGTCCCTGTCTCTCTATGGGATGC
ATCCGAGCCCCTCTGACATGCTCCACAAATGCCATTGTTATGGGAGGAGCTGCCAAGTTT
AAGTGTGTGAACTGCCCAGAAGCCCTGGGGTGCCACTCCTGGACTGTCGGCCAAACAACC
TGAGGTAACTGAAGCCTTGAGAGAGGCCCTCTGCTCTGTCCCCCAACACCAGCTGGTGTT
GCCGAGGGAGGTCAGCAAGAGTTTGGAGCTCTCGTGTGTAGACATAATCACTCACGGGTG
AAAAGAACCCCACCTCCCCATCCCAAAAGGACAGACGCCGTGGGAAATGATTGCCTAATG
AGATGGCTGCTTGGAGCATGTGTAATTTTTTCTAAAGCATACTTCATCTATTTTCTTTAG
ATTACATCAAGTTAACTGTGTAAGGTCAATTCACTTAGTAAGAAAACTCTTTGAGAAATA
AAATCAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAGCAGCTATTCCTTTTAAATCTCTCATTTCTGGACTTGAAAAACCTATCCCGATG
CTCACACCCTTGAGATGAGGCCTGGAGGGGGGAGCCATCAGAGTAGGGCTGCTGGGTGAG
GGCCTAGAAATGTGGAACCCTGGAGTGGAAGGTTCTAGAAATGCAGTATCCTGTGCTTCA
GTGAACTCTTACTACCGAACAGGAACAACAAGAAAAAGTCCCTGTCTCTCTATGGGATGC
ATCCGAGCCCCTCTGACATGCTCCACAAATGCCATTGTTATGGGAGGAGCTGCCAAGTTT
AAGTGTGTGAACTGCCCAGAAGCCCTGGGGTGCCACTCCTGGACTGTCGGCCAAACAACC
TGAGGTAACTGAAGCCTTGAGAGAGGCCCTCTGCTCTGTCCCCCAACACCAGCTGGTGTT
GCCGAGGGAGGTCAGCAAGAGTTTGGAGCTCTCGTGTGTAGACATAATCACTCACGGGTG
AAAAGAACCCCACCTCCCCATCCCAAAAGGACAGACGCCGTGGGAAATGATTGCCTAATG
AGATGGCTGCTTGGAGCATGTGTAATTTTTTCTAAAGCATACTTCATCTATTTTCTTTAG
ATTACATCAAGTTAACTGTGTAAGGTCAATTCACTTAGTAAGAAAACTCTTTGAGAAATA
AAATCAATAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               85-487, gnl|bosTau2|chr19 (38570340-38570745)
               

               
               85-487, gnl|Hg17|chr17 (39073864-39073475)
               

               
               85-487, gnl|Mm7|chr11 (101987182-101986752)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-487, gnl|bosTau2|chr19 (38570340-38570745)
               

               
               85-487, gnl|Hg17|chr17 (39073864-39073475)
               

               
               85-487, gnl|Mm7|chr11 (101987182-101986752)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sag (0.182715)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               lnt (0.142308)

	85-487, gnl\|bosTau2\|chr19 (38570340-38570745)
	85-487, gnl\|Hg17\|chr17 (39073864-39073475)
	85-487, gnl\|Mm7\|chr11 (101987182-101986752)