Non-Coding RNA Search

Ss1.1-Pig4-TMW8012O07.5

Sequence:


               
               GGATTTTCGCCATCAGTTCAGTCCCATAATCATTCTTTCAACCAGTCTTCAAGCTCCCCA
TGGCGCCAAGATACACCGTCACAGCGAAAAGTCAGACAGAATTCTCATCCCTACCTAGCA
GATAGACATTATAGCCGTGAACAGCGTTACGCAGATCATGGGTCTGACCATCATTACAGA
GGAAACAGAGATGATTTCTTCTATGAAGACAGGAATCATGATGGCTGGAGCCATGACTAT
GATAACAGAAGAGACAGTGGTAGAGATGGAAAATGGCGCTCATCTCGACACTAACAAGTG
TTCAAATGATGTTTTTATAGGGTCATTCTAGGCCCTTTTGGTTAAGTTGGCCTGGGAATG
TTTTGTTAAAAAACTGTATAGAGCAGCTTTACAAGTTGCCACATTTCTTTATAAAAATTT
TAAAACACCAGTCCCATACAGAAATGAGAAGAATTGTGGTTCTAGTTTTATTACATTAAT
AACCTTTCACCTCAGGGTTTTAAGAAGAGGAAAGGGTTTTATGCAAAAGAAAGTGCCACA
ATTCCTAATCATTTTAGACAATTGAGGAAAGGATGTATTATATGGATTAGTTGTATTATG
AAACAAATATTTTAATTATTTGTTATCTTTTTGTATTGCAAGTTTCTTGTTAGTGACTCA
GATTTTGGTGGATATAATGAAAACATTCAAGTTGATAGTCTGAAATGACTCAGTATTTTG
TTAATGAGAAAATGTAATTTCAGTGATTCATTTTACTCACATTTGAGGAAACTTTTTGGT
ATAAAGTTTGGGGATAAATCATTAACTTCTTAGAGAACTTAAGTGTAAGTTCTGTGACAT
GCTCTTAAGTTTTACCCTAATTGAGCATTCATGTGTAAATCTACACATGCTATTTCATTA
TAAAATCTTAGAATTTGCTCCTTAAATCTTAATGTTTGATGTATGGCTAAAGTGACTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTTCGCCATCAGTTCAGTCCCATAATCATTCTTTCAACCAGTCTTCAAGCTCCCCA
TGGCGCCAAGATACACCGTCACAGCGAAAAGTCAGACAGAATTCTCATCCCTACCTAGCA
GATAGACATTATAGCCGTGAACAGCGTTACGCAGATCATGGGTCTGACCATCATTACAGA
GGAAACAGAGATGATTTCTTCTATGAAGACAGGAATCATGATGGCTGGAGCCATGACTAT
GATAACAGAAGAGACAGTGGTAGAGATGGAAAATGGCGCTCATCTCGACACTAACAAGTG
TTCAAATGATGTTTTTATAGGGTCATTCTAGGCCCTTTTGGTTAAGTTGGCCTGGGAATG
TTTTGTTAAAAAACTGTATAGAGCAGCTTTACAAGTTGCCACATTTCTTTATAAAAATTT
TAAAACACCAGTCCCATACAGAAATGAGAAGAATTGTGGTTCTAGTTTTATTACATTAAT
AACCTTTCACCTCAGGGTTTTAAGAAGAGGAAAGGGTTTTATGCAAAAGAAAGTGCCACA
ATTCCTAATCATTTTAGACAATTGAGGAAAGGATGTATTATATGGATTAGTTGTATTATG
AAACAAATATTTTAATTATTTGTTATCTTTTTGTATTGCAAGTTTCTTGTTAGTGACTCA
GATTTTGGTGGATATAATGAAAACATTCAAGTTGATAGTCTGAAATGACTCAGTATTTTG
TTAATGAGAAAATGTAATTTCAGTGATTCATTTTACTCACATTTGAGGAAACTTTTTGGT
ATAAAGTTTGGGGATAAATCATTAACTTCTTAGAGAACTTAAGTGTAAGTTCTGTGACAT
GCTCTTAAGTTTTACCCTAATTGAGCATTCATGTGTAAATCTACACATGCTATTTCATTA
TAAAATCTTAGAATTTGCTCCTTAAATCTTAATGTTTGATGTATGGCTAAAGTGACTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-276, + strand, RNAz p=0.814223

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-276, + strand, RNAz p=0.814223

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-928, gnl|bosTau2|chr15 (11747250-11746340)
               

               
               1-928, gnl|Hg17|chr11 (113783443-113784351)
               

               
               1-928, gnl|Mm7|chr9 (48451689-48450763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-928, gnl|bosTau2|chr15 (11747250-11746340)
               

               
               1-928, gnl|Hg17|chr11 (113783443-113784351)
               

               
               1-928, gnl|Mm7|chr9 (48451689-48450763)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fty (0.17584)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-928, gnl\|bosTau2\|chr15 (11747250-11746340)
	1-928, gnl\|Hg17\|chr11 (113783443-113784351)
	1-928, gnl\|Mm7\|chr9 (48451689-48450763)

	fty (0.17584)
	eli (0.151814)
	liv (0.146284)
	ssp (0.13552)
	kid (0.129735)
	clu (0.119646)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)