Ss1.1-Pig4-TMW8012O12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCACTAGCAGATTTGGATCCAGTAGTTGTGACTTTTTGGTATCGGGCTCCAGAACTTTT GCTTGGTGCAAGGCATTATACAAAGGCCATTGATATATGGGCAATAGGTTGCATATTTGC TGAATTGTTGACTTCAGAACCTATTTTTCACTGTCGTCAGGAAGATATAAAAACAAGCAA TCCCTTTCATCATGATCAACTAGATCGGATATTTAGTGTCATGGGGTTTCCTGCAGATAA AGACTGGGAAGATATTAGAAAGATGCCAGAATACCCTACACTTCAAAAAGACTTTAGAAG AACAACATACGCCAACAGTAGCCTCATAAAGTACATGGAGAAACACAAGGTCAAGCCTGA CAGCAAAGTGTTCCTCTTGCTTCAGAAACTCCTCACTATGGATCCAACCAAGAGAATTAC CTCAGAGCAGGCTCTGCAGGATCCCTATTTTCAGGAGGACCCCTTGCCGACATTAGATGT GTTTGCTGGCTGCCAGATTCCATATCCCAAACGAGAATTCCTTAATGAAGATGAGCCTGA AGAGAAAGGTGACAAGAATCAGCAACAGCAGCAGAACCAACATCAGCAGCCCACAGCCCC TCCACAGCAGGCAGCAGCCCCCCCACAGGCACCCCCACAGCAGCAGAACAGCACCCTGCC CCTGCATGTGTTTCGTTGTGACTCCTCTGAGAAAGCGTCTGATCTAATCCCAGCACTTCT GTAACCTTCAGCATTTTTTGGAAGGATTTCCTGGTGCACCTTTCTCATGCTGTAGCAATC ACTCTGATTTATCTTTTCAAAGCTCTTTTAATAGGATTTTAATGTTTTAGAAACAGGACT CCAGTGGTGTATAGTTTTATACTTCATGAACTTATCTAGCAACACAGGTAAATATGCACC TTTTAAAGCACTACGTTGTTTCCACAGAATAGAACTCTTTTGCTCATGGAAGTCTTAAAT GGGAACTGTTACTGTCCCAAAGAACTTTGCTATGATGTTTTAATTTATCTAGTTTCAGGG AAGGTCTAATAAAAAGACGAGTGGTGGGGACAGAAGAACCTGCAACCAAAAACAGCCTAA ATCTTTGCCGTTGCTATGCTGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCACTAGCAGATTTGGATCCAGTAGTTGTGACTTTTTGGTATCGGGCTCCAGAACTTTT GCTTGGTGCAAGGCATTATACAAAGGCCATTGATATATGGGCAATAGGTTGCATATTTGC TGAATTGTTGACTTCAGAACCTATTTTTCACTGTCGTCAGGAAGATATAAAAACAAGCAA TCCCTTTCATCATGATCAACTAGATCGGATATTTAGTGTCATGGGGTTTCCTGCAGATAA AGACTGGGAAGATATTAGAAAGATGCCAGAATACCCTACACTTCAAAAAGACTTTAGAAG AACAACATACGCCAACAGTAGCCTCATAAAGTACATGGAGAAACACAAGGTCAAGCCTGA CAGCAAAGTGTTCCTCTTGCTTCAGAAACTCCTCACTATGGATCCAACCAAGAGAATTAC CTCAGAGCAGGCTCTGCAGGATCCCTATTTTCAGGAGGACCCCTTGCCGACATTAGATGT GTTTGCTGGCTGCCAGATTCCATATCCCAAACGAGAATTCCTTAATGAAGATGAGCCTGA AGAGAAAGGTGACAAGAATCAGCAACAGCAGCAGAACCAACATCAGCAGCCCACAGCCCC TCCACAGCAGGCAGCAGCCCCCCCACAGGCACCCCCACAGCAGCAGAACAGCACCCTGCC CCTGCATGTGTTTCGTTGTGACTCCTCTGAGAAAGCGTCTGATCTAATCCCAGCACTTCT GTAACCTTCAGCATTTTTTGGAAGGATTTCCTGGTGCACCTTTCTCATGCTGTAGCAATC ACTCTGATTTATCTTTTCAAAGCTCTTTTAATAGGATTTTAATGTTTTAGAAACAGGACT CCAGTGGTGTATAGTTTTATACTTCATGAACTTATCTAGCAACACAGGTAAATATGCACC TTTTAAAGCACTACGTTGTTTCCACAGAATAGAACTCTTTTGCTCATGGAAGTCTTAAAT GGGAACTGTTACTGTCCCAAAGAACTTTGCTATGATGTTTTAATTTATCTAGTTTCAGGG AAGGTCTAATAAAAAGACGAGTGGTGGGGACAGAAGAACCTGCAACCAAAAACAGCCTAA ATCTTTGCCGTTGCTATGCTGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 368-487, - strand, RNAz p=0.683433 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 368-487, - strand, RNAz p=0.683433 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 88-240, gnl|bosTau2|chr9 (20880756-20880908) | |
| 88-240, gnl|canFam2|chr12 (70280382-70280484) | |
| 88-240, gnl|danRer3|chr20 (2147147-2147249) | |
| 88-240, gnl|dasNov1|scaffold_45212 (12077-12179) | |
| 88-240, gnl|echTel1|scaffold_283880 (38533-38635) | |
| 88-240, gnl|fr1|chrUn (270636928-270636826) | |
| 88-240, gnl|galGal2|chr3 (64875236-64875134) | |
| 88-240, gnl|hg17|chr6 (111054897-111054999) | |
| 88-240, gnl|Hg17|chr6 (111055046-111054894) | |
| 88-240, gnl|loxAfr1|scaffold_20351 (23921-24023) | |
| 88-240, gnl|mm7|chr10 (40256901-40256799) | |
| 88-240, gnl|Mm7|chr10 (40256750-40256902) | |
| 88-240, gnl|monDom2|scaffold_0 (109230275-109230173) | |
| 88-240, gnl|oryCun1|scaffold_68932 (3174-3072) | |
| 88-240, gnl|panTro1|chr5 (113393436-113393538) | |
| 88-240, gnl|rheMac2|chr4 (153331930-153331828) | |
| 88-240, gnl|rn3|chr20 (44680453-44680351) | |
| 88-240, gnl|tetNig1|chrUn_random (84280702-84280600) | |
| 88-240, gnl|xenTro1|scaffold_174 (481482-481584) | |
| 92-239, gnl|bosTau2|chr12 (16692622-16692475) | |
| 92-239, gnl|Hg17|chr13 (25865503-25865650) | |
| 92-239, gnl|Mm7|chr5 (145180912-145181059) | |
| 368-487, gnl|bosTau2|chr9 (20885422-20885542) | |
| 368-487, gnl|canFam2|chr12 (70274200-70274360) | |
| 368-487, gnl|danRer3|chr20 (2139230-2139396) | |
| 368-487, gnl|dasNov1|scaffold_294472 (820-661) | |
| 368-487, gnl|echTel1|scaffold_283555 (56482-56647) | |
| 368-487, gnl|fr1|chrUn (270637901-270637776) | |
| 368-487, gnl|galGal2|chr3 (64878952-64878811) | |
| 368-487, gnl|hg17|chr6 (111050685-111050844) | |
| 368-487, gnl|Hg17|chr6 (111050820-111050700) | |
| 368-487, gnl|loxAfr1|scaffold_20351 (15943-16099) | |
| 368-487, gnl|mm7|chr10 (40263460-40263298) | |
| 368-487, gnl|Mm7|chr10 (40263321-40263443) | |
| 368-487, gnl|monDom2|scaffold_0 (109243810-109243637) | |
| 368-487, gnl|oryCun1|scaffold_205679 (12488-12644) | |
| 368-487, gnl|panTro1|chr5 (113389213-113389372) | |
| 368-487, gnl|rheMac2|chr4 (153335943-153335784) | |
| 368-487, gnl|rn3|chr20 (44686399-44686227) | |
| 368-487, gnl|tetNig1|chrUn_random (84281577-84281460) | |
| 368-487, gnl|xenTro1|scaffold_174 (478133-478295) | |
| 649-1100, gnl|bosTau2|chr9 (20891680-20892136) | |
| 649-1100, gnl|Hg17|chr6 (111042230-111041783) | |
| 649-1100, gnl|Mm7|chr10 (40267163-40267585) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-240, gnl|bosTau2|chr9 (20880756-20880908) | |
| 88-240, gnl|canFam2|chr12 (70280382-70280484) | |
| 88-240, gnl|danRer3|chr20 (2147147-2147249) | |
| 88-240, gnl|dasNov1|scaffold_45212 (12077-12179) | |
| 88-240, gnl|echTel1|scaffold_283880 (38533-38635) | |
| 88-240, gnl|fr1|chrUn (270636928-270636826) | |
| 88-240, gnl|galGal2|chr3 (64875236-64875134) | |
| 88-240, gnl|hg17|chr6 (111054897-111054999) | |
| 88-240, gnl|Hg17|chr6 (111055046-111054894) | |
| 88-240, gnl|loxAfr1|scaffold_20351 (23921-24023) | |
| 88-240, gnl|mm7|chr10 (40256901-40256799) | |
| 88-240, gnl|Mm7|chr10 (40256750-40256902) | |
| 88-240, gnl|monDom2|scaffold_0 (109230275-109230173) | |
| 88-240, gnl|oryCun1|scaffold_68932 (3174-3072) | |
| 88-240, gnl|panTro1|chr5 (113393436-113393538) | |
| 88-240, gnl|rheMac2|chr4 (153331930-153331828) | |
| 88-240, gnl|rn3|chr20 (44680453-44680351) | |
| 88-240, gnl|tetNig1|chrUn_random (84280702-84280600) | |
| 88-240, gnl|xenTro1|scaffold_174 (481482-481584) | |
| 92-239, gnl|bosTau2|chr12 (16692622-16692475) | |
| 92-239, gnl|Hg17|chr13 (25865503-25865650) | |
| 92-239, gnl|Mm7|chr5 (145180912-145181059) | |
| 368-487, gnl|bosTau2|chr9 (20885422-20885542) | |
| 368-487, gnl|canFam2|chr12 (70274200-70274360) | |
| 368-487, gnl|danRer3|chr20 (2139230-2139396) | |
| 368-487, gnl|dasNov1|scaffold_294472 (820-661) | |
| 368-487, gnl|echTel1|scaffold_283555 (56482-56647) | |
| 368-487, gnl|fr1|chrUn (270637901-270637776) | |
| 368-487, gnl|galGal2|chr3 (64878952-64878811) | |
| 368-487, gnl|hg17|chr6 (111050685-111050844) | |
| 368-487, gnl|Hg17|chr6 (111050820-111050700) | |
| 368-487, gnl|loxAfr1|scaffold_20351 (15943-16099) | |
| 368-487, gnl|mm7|chr10 (40263460-40263298) | |
| 368-487, gnl|Mm7|chr10 (40263321-40263443) | |
| 368-487, gnl|monDom2|scaffold_0 (109243810-109243637) | |
| 368-487, gnl|oryCun1|scaffold_205679 (12488-12644) | |
| 368-487, gnl|panTro1|chr5 (113389213-113389372) | |
| 368-487, gnl|rheMac2|chr4 (153335943-153335784) | |
| 368-487, gnl|rn3|chr20 (44686399-44686227) | |
| 368-487, gnl|tetNig1|chrUn_random (84281577-84281460) | |
| 368-487, gnl|xenTro1|scaffold_174 (478133-478295) | |
| 649-1100, gnl|bosTau2|chr9 (20891680-20892136) | |
| 649-1100, gnl|Hg17|chr6 (111042230-111041783) | |
| 649-1100, gnl|Mm7|chr10 (40267163-40267585) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| cty (0.10408) |