Non-Coding RNA Search

Ss1.1-Pig4-TMW8012P04.3

Sequence:


               
               ACCTCAAGTCCAAGGTGGTGGGCGAGGAGCCCCAGCTCACCCGGAGGACCCACAACGTGT
GAGCCCTCGCCGGCGGGCCAGGCCCTGGGGCCGCACTCCTGCACTGCTGCAATACTGCTC
CCCAGCTCCCCCCGCCCCCGCCTTAGCTGCACTCTGTGATCTCATCTACAGCTGGATGGT
ACCTGTCCGTCTCCTGTCCTTCCAGTCACTTCTGTCCACGTCTGGACTCGGCTGGCCCTG
CCCGCCAGCCCCTTGCTGGTTCTGACCTGATAGCGATGCAGCCAGAGGCGTCCGAGGGTC
AGCCCAAGGGCCGGTGCCCGGGTTGGCCTGTGAAAGAGCTTAGGATCCTCGTTTGCTGGG
TTTGGGTGATGTTGGAGGAGCACCCCCAGCCCACCGTCCCCATTCCTTTCTGCTTCTGGT
TGGAGCTCTGGACCAGGGCCTTAATCCTGGTTGGTTTTTAAATAATTATTTAACAGTGTA
ACTTTTAGACCTGCGCCACATCTACAGAGCGTCCAATAAAGAACGAAGAAGTCGTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCAAGTCCAAGGTGGTGGGCGAGGAGCCCCAGCTCACCCGGAGGACCCACAACGTGT
GAGCCCTCGCCGGCGGGCCAGGCCCTGGGGCCGCACTCCTGCACTGCTGCAATACTGCTC
CCCAGCTCCCCCCGCCCCCGCCTTAGCTGCACTCTGTGATCTCATCTACAGCTGGATGGT
ACCTGTCCGTCTCCTGTCCTTCCAGTCACTTCTGTCCACGTCTGGACTCGGCTGGCCCTG
CCCGCCAGCCCCTTGCTGGTTCTGACCTGATAGCGATGCAGCCAGAGGCGTCCGAGGGTC
AGCCCAAGGGCCGGTGCCCGGGTTGGCCTGTGAAAGAGCTTAGGATCCTCGTTTGCTGGG
TTTGGGTGATGTTGGAGGAGCACCCCCAGCCCACCGTCCCCATTCCTTTCTGCTTCTGGT
TGGAGCTCTGGACCAGGGCCTTAATCCTGGTTGGTTTTTAAATAATTATTTAACAGTGTA
ACTTTTAGACCTGCGCCACATCTACAGAGCGTCCAATAAAGAACGAAGAAGTCGTGAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               72-285, - strand, RNAz p=0.99398
               

               
               364-536, - strand, RNAz p=0.782782

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-285, - strand, RNAz p=0.99398
               

               
               364-536, - strand, RNAz p=0.782782

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               97-227, - strand, RNAmicro p=0.999916

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               97-227, - strand, RNAmicro p=0.999916

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-536, gnl|bosTau2|chr4 (64384711-64385257)
               

               
               1-536, gnl|Hg17|chr7 (150348849-150348242)
               

               
               1-536, gnl|Mm7|chr5 (23606420-23605845)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-536, gnl|bosTau2|chr4 (64384711-64385257)
               

               
               1-536, gnl|Hg17|chr7 (150348849-150348242)
               

               
               1-536, gnl|Mm7|chr5 (23606420-23605845)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               nbm (0.0993246)

	72-285, - strand, RNAz p=0.99398
	364-536, - strand, RNAz p=0.782782

	1-536, gnl\|bosTau2\|chr4 (64384711-64385257)
	1-536, gnl\|Hg17\|chr7 (150348849-150348242)
	1-536, gnl\|Mm7\|chr5 (23606420-23605845)