Non-Coding RNA Search

Ss1.1-Pig4-TMW8013A20.5

Sequence:


               
               GTTGAAGACTTCTCCCCACTGAGGACTAACCCCTACATTTATGCGATGAGTACTGAAGAA
GCCAGATTTCTTACTTACCAAACGTGGCCATTAACCTTTTTGTCACCATCAGAATTGGCA
AGAGCAGGCTTCTATTATATAGGACCTGGAGATAGAGTAGCCTGCTTTGCCTGTGGTGGG
ATGCTAAGTAACTGGGAACCGAAGGATGATGCCATGTCTGAACACCGGAGACACTTCCCT
AACTGTCCATTTTTGGAAAATTCTCAGGACACACTGAGGTTTAGCATTTCAAATTTGAGC
ATGCAGACACACGTGGCTCGACTGAGAACTTTTATGTATTGGCCATCTACTGTACCAGTT
CAGCCTGAGCAGCTCGTAGGCGCTGGTTTCTATTATGTGGGTCGCAATGATGATGTCAAA
TGCTTTTGTTGTGATGGTGGCTTAAGGTGTTGGGAATTAGGAGATGACCCCTGGGTAGAA
CACGCCAAGTGGTTTCCAAGGTGTGAGTTCTTGATACGTATGAAAGGGCAGGAGTTTGTT
GATGAAATTCAAGCTAGATATCCTCATCTTCTTGAACAGCTGTTGTCAACTTCAGATACT
TCTGGCAATGAAAATGCTGATCCACCAATTGTTCATTTTGGGCCTGGAGAAAATTCTTCA
AATGATGTAGTCATGATGAATACACCTGTGGTTAAAGCTGCCTTGGAAATGGGCTTCAGT
AGAAGCCTGATAAAGCGGACAATTCAGAGTAAAATCCTAACAACTGGAGAGAATTATAAA
ACAGTTAATGATATTGTGTCAGCACTTCTTAATGCTGAAGATGAAAAAAGAGAAGAAGAG
AATGAAAGACAAACTGAAGAAACAGCCTCAGATGATTTGTCGTTAATTCGGAGGAATAGA
ATGGCGCTCTTTCAGCAGTTGACATGCGTGCTTCCTATCCTGGATAGCCTTTTAAAGGCC
AGTGTGATTAATAAACAGGAACATGATATTATTAAACAGAAAACACAGATACCTTTACAA
GCAAGAGAACTGATTGATACCATTTTAGTTAAAGGAAATAGTGCTGCCAACATCTTCAAA
AACTGTCTTAAAGAAATTAACTCTACGTTATATAAGAACTTATTTGTGGAAAAGAATATG
AAGTATATTCCAACAGAAGATGTTTCAGGTTTGTCACTGGAAGAACAACTGAGAAGGTTG
CAGGAAGAAAGAACTTGTAAAGTGTGTATGGACAAAGAAGTTTCTATTGTATTCATTCCT
TGTGGTCATCTGGTAGTATGCCAGGAATGTGCCCCTTCTCTAAGAAAATGCCCTATCTGC
AGGGGTATAATTAAGGGTACTGTTCGTACATTTCTCTCATAAGAGAAAAACAGGCTATAT
ATTAGTCTATATATAAAAGTCTTTAAAATGTTATAACATTTGAATCTATCTGAAATAAAA
ATAATTGTTGGTTGTTTAATTAGTAATATTTGTATTCTCTTCTGCTTTCTCTGGTACTAG
TAATCTTGTTTTCAAAACAGTATCATACATAATATTTAATCTTAATCTCTGTTTATGTGA
AAGGAAGATTTATGTTTGAGCTATATTAGTGTACATGTATGGACACAGAAGTTAAAGGAG
TAGTCTTAATGCTCTTAGGTACCATTTTAGGAGTGGCTGGATTTGGTATCTTTCTGAAAG
CCTTTTGTCCTACTCTTGAGTGTAGTTGACAGGAACTGGAAGCCAGGAACTCTGGAGTTT
ATCACAGTTAATAGTGCCAAGTTCTCATTGGTGTTTTTTCACTTGTGTTGTAAAATACAG
GTTTTTCTCTTATGGTAAAAAAGCTTTTCCCTAATGTGAGAAAGAAACATCTTTATATAG
GTCTTTAAAAAAATTTCAATCATCACATTTTTTCTTTTAATTTAAAGAATAATTTCCATA
AGCTTCATAGGGTTATAAGGATGATAATGTACATGAGCATAGTACTTGTCACATTGTAAT
CACAGATGCTAGCTATTAAATAAAAAATTGTATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAGACTTCTCCCCACTGAGGACTAACCCCTACATTTATGCGATGAGTACTGAAGAA
GCCAGATTTCTTACTTACCAAACGTGGCCATTAACCTTTTTGTCACCATCAGAATTGGCA
AGAGCAGGCTTCTATTATATAGGACCTGGAGATAGAGTAGCCTGCTTTGCCTGTGGTGGG
ATGCTAAGTAACTGGGAACCGAAGGATGATGCCATGTCTGAACACCGGAGACACTTCCCT
AACTGTCCATTTTTGGAAAATTCTCAGGACACACTGAGGTTTAGCATTTCAAATTTGAGC
ATGCAGACACACGTGGCTCGACTGAGAACTTTTATGTATTGGCCATCTACTGTACCAGTT
CAGCCTGAGCAGCTCGTAGGCGCTGGTTTCTATTATGTGGGTCGCAATGATGATGTCAAA
TGCTTTTGTTGTGATGGTGGCTTAAGGTGTTGGGAATTAGGAGATGACCCCTGGGTAGAA
CACGCCAAGTGGTTTCCAAGGTGTGAGTTCTTGATACGTATGAAAGGGCAGGAGTTTGTT
GATGAAATTCAAGCTAGATATCCTCATCTTCTTGAACAGCTGTTGTCAACTTCAGATACT
TCTGGCAATGAAAATGCTGATCCACCAATTGTTCATTTTGGGCCTGGAGAAAATTCTTCA
AATGATGTAGTCATGATGAATACACCTGTGGTTAAAGCTGCCTTGGAAATGGGCTTCAGT
AGAAGCCTGATAAAGCGGACAATTCAGAGTAAAATCCTAACAACTGGAGAGAATTATAAA
ACAGTTAATGATATTGTGTCAGCACTTCTTAATGCTGAAGATGAAAAAAGAGAAGAAGAG
AATGAAAGACAAACTGAAGAAACAGCCTCAGATGATTTGTCGTTAATTCGGAGGAATAGA
ATGGCGCTCTTTCAGCAGTTGACATGCGTGCTTCCTATCCTGGATAGCCTTTTAAAGGCC
AGTGTGATTAATAAACAGGAACATGATATTATTAAACAGAAAACACAGATACCTTTACAA
GCAAGAGAACTGATTGATACCATTTTAGTTAAAGGAAATAGTGCTGCCAACATCTTCAAA
AACTGTCTTAAAGAAATTAACTCTACGTTATATAAGAACTTATTTGTGGAAAAGAATATG
AAGTATATTCCAACAGAAGATGTTTCAGGTTTGTCACTGGAAGAACAACTGAGAAGGTTG
CAGGAAGAAAGAACTTGTAAAGTGTGTATGGACAAAGAAGTTTCTATTGTATTCATTCCT
TGTGGTCATCTGGTAGTATGCCAGGAATGTGCCCCTTCTCTAAGAAAATGCCCTATCTGC
AGGGGTATAATTAAGGGTACTGTTCGTACATTTCTCTCATAAGAGAAAAACAGGCTATAT
ATTAGTCTATATATAAAAGTCTTTAAAATGTTATAACATTTGAATCTATCTGAAATAAAA
ATAATTGTTGGTTGTTTAATTAGTAATATTTGTATTCTCTTCTGCTTTCTCTGGTACTAG
TAATCTTGTTTTCAAAACAGTATCATACATAATATTTAATCTTAATCTCTGTTTATGTGA
AAGGAAGATTTATGTTTGAGCTATATTAGTGTACATGTATGGACACAGAAGTTAAAGGAG
TAGTCTTAATGCTCTTAGGTACCATTTTAGGAGTGGCTGGATTTGGTATCTTTCTGAAAG
CCTTTTGTCCTACTCTTGAGTGTAGTTGACAGGAACTGGAAGCCAGGAACTCTGGAGTTT
ATCACAGTTAATAGTGCCAAGTTCTCATTGGTGTTTTTTCACTTGTGTTGTAAAATACAG
GTTTTTCTCTTATGGTAAAAAAGCTTTTCCCTAATGTGAGAAAGAAACATCTTTATATAG
GTCTTTAAAAAAATTTCAATCATCACATTTTTTCTTTTAATTTAAAGAATAATTTCCATA
AGCTTCATAGGGTTATAAGGATGATAATGTACATGAGCATAGTACTTGTCACATTGTAAT
CACAGATGCTAGCTATTAAATAAAAAATTGTATTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16740585|gb|AAH16174.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16740585|gb|AAH16174.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1264-1381, + strand, RNAz p=0.508726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1264-1381, + strand, RNAz p=0.508726

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-141, gnl|bosTau2|chr26 (17927008-17926868)
               

               
               1-141, gnl|Hg17|chr11 (101726291-101726416)
               

               
               1-141, gnl|Mm7|chr9 (7857885-7857748)
               


               
               872-1443, gnl|bosTau2|chr26 (17922056-17921519)
               

               
               872-1443, gnl|Mm7|chrUn_random (8952738-8953594)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-141, gnl|bosTau2|chr26 (17927008-17926868)
               

               
               1-141, gnl|Hg17|chr11 (101726291-101726416)
               

               
               1-141, gnl|Mm7|chr9 (7857885-7857748)
               


               
               872-1443, gnl|bosTau2|chr26 (17922056-17921519)
               

               
               872-1443, gnl|Mm7|chrUn_random (8952738-8953594)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               lin (0.582411)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               cbl (0.344392)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               thg (0.380373)
               

               
               cbl (0.344392)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               eep (0.122564)

	1-141, gnl\|bosTau2\|chr26 (17927008-17926868)
	1-141, gnl\|Hg17\|chr11 (101726291-101726416)
	1-141, gnl\|Mm7\|chr9 (7857885-7857748)

	872-1443, gnl\|bosTau2\|chr26 (17922056-17921519)
	872-1443, gnl\|Mm7\|chrUn_random (8952738-8953594)

	lin (0.582411)
	tbr (0.462535)
	ski (0.440205)
	kid (0.389206)
	sug (0.381874)
	thg (0.380373)
	cbl (0.344392)
	liv (0.292569)
	ret (0.257467)
	med (0.232504)
	jca (0.22792)
	spc (0.226732)
	nms (0.213858)
	hea (0.204499)
	nep (0.183925)
	mgm (0.180343)
	gul (0.177588)
	ton (0.1755)
	mga (0.160205)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	tra (0.123092)
	eep (0.122564)