Non-Coding RNA Search

Ss1.1-Pig4-TMW8013B17.5

Sequence:


               
               CTCTTGCAGCAGACAAGAATGAGATTTTGTTTTCTGAATTCAACATCAACTATAACAATG
AGCCAATGATGTTCAGGAAGGGGACTGTGTTGATATGGCAGAAGGTGGATGAAGTCACAA
CAAAAGAAGTTAAGCTGCCAGCAGAAATGGAAGGGATGAAGATGGTGGTGACTCGGACCA
GAACTAAGCCGGTACCCTTACACTGCGATATCATCGGGGATGCTTTCTGGAAGGAACATC
CAGAGATCCTGGATGAAGACAGCTGACCCTTTGCCTTTCAATCCTGGCATGCTTGACCAT
GCAGAGCCCTCCAAGCCTCCTGGTCTTAGGTGCCCCTAGCATCTCTGCATCCTTGGAAGC
GACATGACTCTGGTTGGGAGGGGAGCAAGGAACGGGAGGATGGATGTGGGTGGTGTATCG
TGTTCTGCTTTAAGTGGAACACCTTTTTTTGCAGTGTTGAAACATGGTTCCTTTGGTTGA
AATGCATTTTTACAAAATCGTGGTACTATTTTTATAAAGCAAGAACTATTTTATGCCTTG
CAGAATGAATCATTTTTAGATTATGGCATAAGTCTCATAAAAACCTGTCATGCTCTTTTC
ACCTTGATGGAAGATGAGCCCAGACTTTACTCTCACTCACCTGTTCATAAACGGAGATGC
CAGTGACCTTGATAATCTCACCTTTTGCATCATCTGCTTGGATTCATCTCTGGCCGACCT
GGAGTGAATATGGATTGATGCCTGCCTGATGCCTCTGAATTCAGGAACTCCAGGACCTAC
TCAGGGCTTTGTGCCTTTCTCCAAGTTGGCACCTTGGGCTGAACAAGAGTTGTAGTTGGA
TGTCCTTGTGTAAACATTCTGCAGATTGAGTTGGTGGAGTTGTCGGCATGATCATCGTCA
TCTTGCCAGCGCAATGATTCCAAGGCCATTTACCTCTTTCTAAAAAGAAAGAAAATTATG
TGTCTTTATGAGAGCAAAAACTTGTGAAAATAGATGGAGGAGGAGGAAACATTTACCCTC
TGTCCTCTAGATACTTCAGTTTGAAAAGTCACCTCCCTGATATTCTCTTTTAGCCACGGC
AGTTTAAAGGATCCAGCCTTGTCACTGCGGCGGCTCAGGTTGTTGCCATAGCACAGGTTC
AATCCCTGGCCCAGGAACTTCCACGGGCGTAACCAAAAACAAAACTAAAAGTCACCTCCC
TGTTGGACTGACTGAAAAAGATTCTTAGTAGCCTCTGTATAATCAGAATAATGACATTTG
AATTAGAGAGCAGAGGAGCCCACACTCCCCTTGAGGTCACGGGTGGCACAGGAGTCCTAG
TCATTCCACCTGCAGCTGGGCCAGTGGAGTTGGGTGAGGAGCAGCCGGAATTGCATGTTG
TCAGGATGTTGGCCTCTGAAGGGGGAGGCAGTGGGGGTACATGGTGAGAGAACGCATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTGCAGCAGACAAGAATGAGATTTTGTTTTCTGAATTCAACATCAACTATAACAATG
AGCCAATGATGTTCAGGAAGGGGACTGTGTTGATATGGCAGAAGGTGGATGAAGTCACAA
CAAAAGAAGTTAAGCTGCCAGCAGAAATGGAAGGGATGAAGATGGTGGTGACTCGGACCA
GAACTAAGCCGGTACCCTTACACTGCGATATCATCGGGGATGCTTTCTGGAAGGAACATC
CAGAGATCCTGGATGAAGACAGCTGACCCTTTGCCTTTCAATCCTGGCATGCTTGACCAT
GCAGAGCCCTCCAAGCCTCCTGGTCTTAGGTGCCCCTAGCATCTCTGCATCCTTGGAAGC
GACATGACTCTGGTTGGGAGGGGAGCAAGGAACGGGAGGATGGATGTGGGTGGTGTATCG
TGTTCTGCTTTAAGTGGAACACCTTTTTTTGCAGTGTTGAAACATGGTTCCTTTGGTTGA
AATGCATTTTTACAAAATCGTGGTACTATTTTTATAAAGCAAGAACTATTTTATGCCTTG
CAGAATGAATCATTTTTAGATTATGGCATAAGTCTCATAAAAACCTGTCATGCTCTTTTC
ACCTTGATGGAAGATGAGCCCAGACTTTACTCTCACTCACCTGTTCATAAACGGAGATGC
CAGTGACCTTGATAATCTCACCTTTTGCATCATCTGCTTGGATTCATCTCTGGCCGACCT
GGAGTGAATATGGATTGATGCCTGCCTGATGCCTCTGAATTCAGGAACTCCAGGACCTAC
TCAGGGCTTTGTGCCTTTCTCCAAGTTGGCACCTTGGGCTGAACAAGAGTTGTAGTTGGA
TGTCCTTGTGTAAACATTCTGCAGATTGAGTTGGTGGAGTTGTCGGCATGATCATCGTCA
TCTTGCCAGCGCAATGATTCCAAGGCCATTTACCTCTTTCTAAAAAGAAAGAAAATTATG
TGTCTTTATGAGAGCAAAAACTTGTGAAAATAGATGGAGGAGGAGGAAACATTTACCCTC
TGTCCTCTAGATACTTCAGTTTGAAAAGTCACCTCCCTGATATTCTCTTTTAGCCACGGC
AGTTTAAAGGATCCAGCCTTGTCACTGCGGCGGCTCAGGTTGTTGCCATAGCACAGGTTC
AATCCCTGGCCCAGGAACTTCCACGGGCGTAACCAAAAACAAAACTAAAAGTCACCTCCC
TGTTGGACTGACTGAAAAAGATTCTTAGTAGCCTCTGTATAATCAGAATAATGACATTTG
AATTAGAGAGCAGAGGAGCCCACACTCCCCTTGAGGTCACGGGTGGCACAGGAGTCCTAG
TCATTCCACCTGCAGCTGGGCCAGTGGAGTTGGGTGAGGAGCAGCCGGAATTGCATGTTG
TCAGGATGTTGGCCTCTGAAGGGGGAGGCAGTGGGGGTACATGGTGAGAGAACGCATATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10435256|dbj|BAB14540.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435256|dbj|BAB14540.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               103-1006, gnl|bosTau2|chr7 (47102702-47101788)
               

               
               103-1006, gnl|Hg17|chr5 (157098905-157099849)
               

               
               103-1006, gnl|Mm7|chr11 (45905083-45904119)
               


               
               1188-1440, gnl|bosTau2|chr7 (47101774-47101536)
               

               
               1188-1440, gnl|Hg17|chr5 (157099863-157100142)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-1006, gnl|bosTau2|chr7 (47102702-47101788)
               

               
               103-1006, gnl|Hg17|chr5 (157098905-157099849)
               

               
               103-1006, gnl|Mm7|chr11 (45905083-45904119)
               


               
               1188-1440, gnl|bosTau2|chr7 (47101774-47101536)
               

               
               1188-1440, gnl|Hg17|chr5 (157099863-157100142)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.172801)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	103-1006, gnl\|bosTau2\|chr7 (47102702-47101788)
	103-1006, gnl\|Hg17\|chr5 (157098905-157099849)
	103-1006, gnl\|Mm7\|chr11 (45905083-45904119)

	1188-1440, gnl\|bosTau2\|chr7 (47101774-47101536)
	1188-1440, gnl\|Hg17\|chr5 (157099863-157100142)