Ss1.1-Pig4-TMW8013C04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATTATTCTCATTTATTTATAAAATGATTTTACAAAACTTTTAAAACTGCTAAGCTTCCC ATTTCCCCCCACTGCCATATACATGAGACCGTTTAAACCAGTCCTGTTGCCACTGACAAG CCTTGGCTGAACTCCAGAATTAACAGTACACACATGTTGGCTCGAGACCAGAATCATCCC TCTGAAACTCAAGCCAAAAGGTAGCAATCTGGTACTGCAGCTTAAAGCGAGTGATTGGTA GGAATTTTTAAAAAAGCGATTTGAGTCCCATTCTGGGCTATGGCCCACATTTGTTGACTT CAATTGGAAAGACCAGGACCTGATTTGGAGTTTGAAGTAAGGACTCTACAGAAGCGCGTG TAGGCAACACCCCTTTCAGCAGGCTCCAGGTCTCCCTCCCGAGCGGCTCTCCCTACAGGG GGTTCTTCCTGACGTCAATCATCCCTGGGCTGGCCCTTCGTAGTTCCCGCCGGGGCTTGG GCAAGGACCCGAGGTTCCAGGGTGGACCCACCTCACCCACAGCTAGCACCCGCCCCACCA GGGGCTCAGTGGCCTCCCGCTGCCGCAGCTCCTCAGGGGAGCCCTGCTCCTCACTGCACA GGCTCGAGCGTTTCCATGTCAACGGCAATGGGGCATGGACCAAGTCCCTTATCTCCTCCC GGGCCCTGGGGGCGCCCTCGACGAGGGGGGACTGCCAGAGCGGCTCAGGTGCTGCGTGGG GCCCGTCTTCATTTGCAGGGGCTTGTCTGTTGTCCAGGCACAGGGTCCTCTTCTCCCCAC CTGTCACCCTGCCCTGGCCTCCAGTGTCCAAACTGCTGAGCTGCTGCTTCAGTTCCTGGT TTAGCCACACGTGGCGGCCCAGCTCCTTCTCCAGAGCTTGGATCCTGGTCTCATACTGCC TCTTGCTGTCCGCAAACCCTTCACCAAGGTGGTCTCGACTCTGCTGGAGCAGGAGCTGCA TGTTCTGCTCATGCTCCTTCTGCTGCAGGGTCAGCTGGCGGTCCATCTCCAGGCGCTGCC GCTCCAGGGCTACCTCCAGCCAGTAGACCAGCCTCTGCTGCTCCTCCAACTGCATCTCCA ACTCCGAGAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATTATTCTCATTTATTTATAAAATGATTTTACAAAACTTTTAAAACTGCTAAGCTTCCC ATTTCCCCCCACTGCCATATACATGAGACCGTTTAAACCAGTCCTGTTGCCACTGACAAG CCTTGGCTGAACTCCAGAATTAACAGTACACACATGTTGGCTCGAGACCAGAATCATCCC TCTGAAACTCAAGCCAAAAGGTAGCAATCTGGTACTGCAGCTTAAAGCGAGTGATTGGTA GGAATTTTTAAAAAAGCGATTTGAGTCCCATTCTGGGCTATGGCCCACATTTGTTGACTT CAATTGGAAAGACCAGGACCTGATTTGGAGTTTGAAGTAAGGACTCTACAGAAGCGCGTG TAGGCAACACCCCTTTCAGCAGGCTCCAGGTCTCCCTCCCGAGCGGCTCTCCCTACAGGG GGTTCTTCCTGACGTCAATCATCCCTGGGCTGGCCCTTCGTAGTTCCCGCCGGGGCTTGG GCAAGGACCCGAGGTTCCAGGGTGGACCCACCTCACCCACAGCTAGCACCCGCCCCACCA GGGGCTCAGTGGCCTCCCGCTGCCGCAGCTCCTCAGGGGAGCCCTGCTCCTCACTGCACA GGCTCGAGCGTTTCCATGTCAACGGCAATGGGGCATGGACCAAGTCCCTTATCTCCTCCC GGGCCCTGGGGGCGCCCTCGACGAGGGGGGACTGCCAGAGCGGCTCAGGTGCTGCGTGGG GCCCGTCTTCATTTGCAGGGGCTTGTCTGTTGTCCAGGCACAGGGTCCTCTTCTCCCCAC CTGTCACCCTGCCCTGGCCTCCAGTGTCCAAACTGCTGAGCTGCTGCTTCAGTTCCTGGT TTAGCCACACGTGGCGGCCCAGCTCCTTCTCCAGAGCTTGGATCCTGGTCTCATACTGCC TCTTGCTGTCCGCAAACCCTTCACCAAGGTGGTCTCGACTCTGCTGGAGCAGGAGCTGCA TGTTCTGCTCATGCTCCTTCTGCTGCAGGGTCAGCTGGCGGTCCATCTCCAGGCGCTGCC GCTCCAGGGCTACCTCCAGCCAGTAGACCAGCCTCTGCTGCTCCTCCAACTGCATCTCCA ACTCCGAGAAGG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 230-333, - strand, RNAz p=0.822627 | |
| 934-1052, + strand, RNAz p=0.968705 | |
| 935-1054, - strand, RNAz p=0.583993 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 230-333, - strand, RNAz p=0.822627 | |
| 934-1052, + strand, RNAz p=0.968705 | |
| 935-1054, - strand, RNAz p=0.583993 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_198525, - |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 191-787, gnl|bosTau2|chr21 (15584144-15583544) | |
| 191-787, gnl|Hg17|chr15 (87972404-87973028) | |
| 191-787, gnl|Mm7|chr7 (75566673-75567218) | |
| 934-1092, gnl|bosTau2|chr21 (15583108-15582950) | |
| 934-1092, gnl|canFam2|chr3 (55492042-55492254) | |
| 934-1092, gnl|danRer3|chr7 (5971383-5971596) | |
| 934-1092, gnl|dasNov1|scaffold_12493 (4971-4750) | |
| 934-1092, gnl|echTel1|scaffold_304174 (13998-14210) | |
| 934-1092, gnl|fr1|chrUn (297416200-297415993) | |
| 934-1092, gnl|galGal2|chr10 (13421268-13421046) | |
| 934-1092, gnl|hg17|chr15 (87973595-87973818) | |
| 934-1092, gnl|Hg17|chr15 (87973610-87973768) | |
| 934-1092, gnl|loxAfr1|scaffold_37750 (31161-30935) | |
| 934-1092, gnl|mm7|chr7 (75567679-75567891) | |
| 934-1092, gnl|Mm7|chr7 (75567683-75567841) | |
| 934-1092, gnl|monDom2|scaffold_45 (10842810-10842599) | |
| 934-1092, gnl|oryCun1|scaffold_196554 (18750-18973) | |
| 934-1092, gnl|panTro1|chr16 (88849184-88849385) | |
| 934-1092, gnl|rheMac2|chr7 (69262507-69262731) | |
| 934-1092, gnl|rn3|chr1 (135552319-135552531) | |
| 934-1092, gnl|tetNig1|chr5 (5056498-5056258) | |
| 934-1092, gnl|xenTro1|scaffold_130 (902482-902280) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 191-787, gnl|bosTau2|chr21 (15584144-15583544) | |
| 191-787, gnl|Hg17|chr15 (87972404-87973028) | |
| 191-787, gnl|Mm7|chr7 (75566673-75567218) | |
| 934-1092, gnl|bosTau2|chr21 (15583108-15582950) | |
| 934-1092, gnl|canFam2|chr3 (55492042-55492254) | |
| 934-1092, gnl|danRer3|chr7 (5971383-5971596) | |
| 934-1092, gnl|dasNov1|scaffold_12493 (4971-4750) | |
| 934-1092, gnl|echTel1|scaffold_304174 (13998-14210) | |
| 934-1092, gnl|fr1|chrUn (297416200-297415993) | |
| 934-1092, gnl|galGal2|chr10 (13421268-13421046) | |
| 934-1092, gnl|hg17|chr15 (87973595-87973818) | |
| 934-1092, gnl|Hg17|chr15 (87973610-87973768) | |
| 934-1092, gnl|loxAfr1|scaffold_37750 (31161-30935) | |
| 934-1092, gnl|mm7|chr7 (75567679-75567891) | |
| 934-1092, gnl|Mm7|chr7 (75567683-75567841) | |
| 934-1092, gnl|monDom2|scaffold_45 (10842810-10842599) | |
| 934-1092, gnl|oryCun1|scaffold_196554 (18750-18973) | |
| 934-1092, gnl|panTro1|chr16 (88849184-88849385) | |
| 934-1092, gnl|rheMac2|chr7 (69262507-69262731) | |
| 934-1092, gnl|rn3|chr1 (135552319-135552531) | |
| 934-1092, gnl|tetNig1|chr5 (5056498-5056258) | |
| 934-1092, gnl|xenTro1|scaffold_130 (902482-902280) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sme (0.305437) | |
| fce (0.271592) | |
| mas (0.210305) | |
| lnt (0.142308) | |
| ese (0.126502) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| fce (0.271592) | |
| mas (0.210305) | |
| lnt (0.142308) | |
| ese (0.126502) |