Non-Coding RNA Search

Ss1.1-Pig4-TMW8013C21.3

Sequence:


               
               AGGCAGTAATTACGATGATGCCATGCAGTTCTCAAAGAAAAGAAGATACCTGCCAACTGC
CAGCAGCAACAGTGCCTTTTCCGTGAACGTGGGACACATGGTCTCCCAGCAGTCCGTCAT
CCAGTCCGCGGGTGTCGGCGTTTTGGACAGTGAGGCCCCGTTGTCCCTCATTGACTCCTC
AGCTCTGAACGCGGAGATCAAGGCTTGCCACGACAAGTCGGGGATTCCTGATGAGGTTTT
GCAGAGTATTTTGGATCAGTACTCCAGCAAGTCAGAGAGCCAGAAGGAGGACCCCTTCAG
CATAACGGAACCCCGGGTGGATTTACACACCTCAGGAGATCACTCGGAGCTGGTTCAAGA
AGACAATTTGAGTCCTGGCACCCAGACTCCTTCCAATGATAAGGCAAGCATGTTACAAGA
ATACTCCAAATACCTCCAGCAGGCTTTTGAAAAATCCACGAATGCAGGTTTTACTCTGGG
ACACGGTTTCCAGTTTGTCAGTCTGTCCTCACCTCTCCACAACCACAGTTTATTTCCAGA
AAAACAGATATACACTACGTCTCCTTTGGAATGTGGTTTCGGCCAGTCTGTTACCTCAGT
GTTGCCATCTTCATTGCCAAAGCCTCCTTTTGGGATGTTGTTTGGATCTCAGCCAGGTCT
TTATTTATCTGCTTTGGATGCCACTCATCAGCAGTTGACACCTTCCCAGGAGCTGGATGA
TCTGATCGATTCTCAGAAGAATTTAGAGACTTCATCCGCCTTCCAGGCCTCATCTCAGAA
ACTGACTAGCCAGAAGGAACAGCAGAAAAACTTAGAGTCCTCAGCAGGCTTTCAGATTCC
ATCTCAGGAGTTAGCTAGCCAGATAGATCCTCAGAAAGACGTAGAGCCTAGAACAACGTA
CCAGATTGAGAACTTCGCACAAGCGTTTGGTTCTCAGTTCAAGTCGGGCAGCAGGGTGCC
AATGACTTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGCAAGGACTTCAGTGTC
AGATTTCTCAGGGTATACAAATATGATGTCTGATGTTAGTGAGCCATGTAGTACCAGAGT
AAAGACACCCACCAGCCAGAGTTACAGGTAAGGTCCCGAGAGTGACCAGGCTGGAGGTCT
TCTAATGTAATTGTGTTTTATTTTGAGAACACTGCCATTGGAATGTTTCTACACGATCCT
ATTAAGAATAATGTAATGCCCTTTCAATGCAACTTTTCATATTTAGTTTATTTTGTTAGC
GTGATTTTAGCTCTGTTTGTATTATGATTTTTAATCAAAATCAATAGATTAAAATAGTTT
GACATTCGAAGTGACAATGTCTAGCAATCAAATTTACATGTATAGATCGTCAGGGAATAG
CCCAAAAGTTTTAAATGCAAAAAAAAGTGAACATAAAAAACCATACAAAAAAACGAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAGTAATTACGATGATGCCATGCAGTTCTCAAAGAAAAGAAGATACCTGCCAACTGC
CAGCAGCAACAGTGCCTTTTCCGTGAACGTGGGACACATGGTCTCCCAGCAGTCCGTCAT
CCAGTCCGCGGGTGTCGGCGTTTTGGACAGTGAGGCCCCGTTGTCCCTCATTGACTCCTC
AGCTCTGAACGCGGAGATCAAGGCTTGCCACGACAAGTCGGGGATTCCTGATGAGGTTTT
GCAGAGTATTTTGGATCAGTACTCCAGCAAGTCAGAGAGCCAGAAGGAGGACCCCTTCAG
CATAACGGAACCCCGGGTGGATTTACACACCTCAGGAGATCACTCGGAGCTGGTTCAAGA
AGACAATTTGAGTCCTGGCACCCAGACTCCTTCCAATGATAAGGCAAGCATGTTACAAGA
ATACTCCAAATACCTCCAGCAGGCTTTTGAAAAATCCACGAATGCAGGTTTTACTCTGGG
ACACGGTTTCCAGTTTGTCAGTCTGTCCTCACCTCTCCACAACCACAGTTTATTTCCAGA
AAAACAGATATACACTACGTCTCCTTTGGAATGTGGTTTCGGCCAGTCTGTTACCTCAGT
GTTGCCATCTTCATTGCCAAAGCCTCCTTTTGGGATGTTGTTTGGATCTCAGCCAGGTCT
TTATTTATCTGCTTTGGATGCCACTCATCAGCAGTTGACACCTTCCCAGGAGCTGGATGA
TCTGATCGATTCTCAGAAGAATTTAGAGACTTCATCCGCCTTCCAGGCCTCATCTCAGAA
ACTGACTAGCCAGAAGGAACAGCAGAAAAACTTAGAGTCCTCAGCAGGCTTTCAGATTCC
ATCTCAGGAGTTAGCTAGCCAGATAGATCCTCAGAAAGACGTAGAGCCTAGAACAACGTA
CCAGATTGAGAACTTCGCACAAGCGTTTGGTTCTCAGTTCAAGTCGGGCAGCAGGGTGCC
AATGACTTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGCAAGGACTTCAGTGTC
AGATTTCTCAGGGTATACAAATATGATGTCTGATGTTAGTGAGCCATGTAGTACCAGAGT
AAAGACACCCACCAGCCAGAGTTACAGGTAAGGTCCCGAGAGTGACCAGGCTGGAGGTCT
TCTAATGTAATTGTGTTTTATTTTGAGAACACTGCCATTGGAATGTTTCTACACGATCCT
ATTAAGAATAATGTAATGCCCTTTCAATGCAACTTTTCATATTTAGTTTATTTTGTTAGC
GTGATTTTAGCTCTGTTTGTATTATGATTTTTAATCAAAATCAATAGATTAAAATAGTTT
GACATTCGAAGTGACAATGTCTAGCAATCAAATTTACATGTATAGATCGTCAGGGAATAG
CCCAAAAGTTTTAAATGCAAAAAAAAGTGAACATAAAAAACCATACAAAAAAACGAAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61885983|ref|XP_595662.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885983|ref|XP_595662.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               82-361, + strand, RNAz p=0.804575
               

               
               1321-1438, - strand, RNAz p=0.575149

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-361, + strand, RNAz p=0.804575
               

               
               1321-1438, - strand, RNAz p=0.575149

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_012482, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012482, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1440, gnl|bosTau2|chr16 (56295107-56296544)
               

               
               3-1440, gnl|Hg17|chr1 (197108908-197107491)
               

               
               3-1440, gnl|Mm7|chr1 (136514951-136516396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1440, gnl|bosTau2|chr16 (56295107-56296544)
               

               
               3-1440, gnl|Hg17|chr1 (197108908-197107491)
               

               
               3-1440, gnl|Mm7|chr1 (136514951-136516396)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pan (0.471921)
               

               
               tes (0.207814)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.471921)
               

               
               tes (0.207814)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	82-361, + strand, RNAz p=0.804575
	1321-1438, - strand, RNAz p=0.575149

	3-1440, gnl\|bosTau2\|chr16 (56295107-56296544)
	3-1440, gnl\|Hg17\|chr1 (197108908-197107491)
	3-1440, gnl\|Mm7\|chr1 (136514951-136516396)

	pan (0.471921)
	tes (0.207814)
	eye (0.170503)
	isp (0.150376)
	lnt (0.142308)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	spc (0.113366)