Non-Coding RNA Search

Ss1.1-Pig4-TMW8013D07.3

Sequence:


               
               GTGGGAGAGTGGTCCCACTTTCTGGATCCCCTGGCTTGGTGCCTGCCTGGAGGCCATTTC
TCCTGGGGCCTGAGGACTGCCTGGTCCCCCCAAGCCTGCTGGGAGGCTGCTTGGGCCAGA
AAGTGGGCCGGGACCTCAGCACAGACCTGGGGGTTCTCACAGCAGGGGCTCCCTTGGTGC
CAAGTGCAGGCGGGAACAGTTGCCTTGGACCTGGCCCCCTCTCCTCTCCTCTCCTCTCCA
TCCCCCACCCACCAGGTGAGCCAGCCCCTGTGTCACGTGTACATACTGTGCCTTTTCTCG
TTATTGTTTAGGGGTGGGGGGGTGGTTTTTTCACTGGAAAGGGGGATACGCCTATGGCTT
CCTTGATGTGGAATCATTCACTGTGTCCTGGATGTGGGTTATTCAATAAACACAGATCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGAGAGTGGTCCCACTTTCTGGATCCCCTGGCTTGGTGCCTGCCTGGAGGCCATTTC
TCCTGGGGCCTGAGGACTGCCTGGTCCCCCCAAGCCTGCTGGGAGGCTGCTTGGGCCAGA
AAGTGGGCCGGGACCTCAGCACAGACCTGGGGGTTCTCACAGCAGGGGCTCCCTTGGTGC
CAAGTGCAGGCGGGAACAGTTGCCTTGGACCTGGCCCCCTCTCCTCTCCTCTCCTCTCCA
TCCCCCACCCACCAGGTGAGCCAGCCCCTGTGTCACGTGTACATACTGTGCCTTTTCTCG
TTATTGTTTAGGGGTGGGGGGGTGGTTTTTTCACTGGAAAGGGGGATACGCCTATGGCTT
CCTTGATGTGGAATCATTCACTGTGTCCTGGATGTGGGTTATTCAATAAACACAGATCGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               105-420, gnl|bosTau2|chr5 (70426522-70426839)
               

               
               105-420, gnl|Hg17|chr22 (40627472-40627800)
               

               
               105-420, gnl|Mm7|chr15 (82289494-82289764)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-420, gnl|bosTau2|chr5 (70426522-70426839)
               

               
               105-420, gnl|Hg17|chr22 (40627472-40627800)
               

               
               105-420, gnl|Mm7|chr15 (82289494-82289764)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fli (0.202881)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	105-420, gnl\|bosTau2\|chr5 (70426522-70426839)
	105-420, gnl\|Hg17\|chr22 (40627472-40627800)
	105-420, gnl\|Mm7\|chr15 (82289494-82289764)

	fli (0.202881)
	cag (0.151194)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	ebs (0.118301)