Non-Coding RNA Search

Ss1.1-Pig4-TMW8013D16.5

Sequence:


               
               TTCAGGAGTTGAGGGCTCAGGGTTCAGGTTAAAGAGGCACTGTCAACTTATGTATAAAAG
TATAACATGGGTTTTTCCTTTTTCTACTTGAAAAGGACCAGATTTTAAAAATAACCGTAT
GTAATTTAAAAGTTTGAATTTAAAGCAGAGAAAAACTTCTGCTTTTAGAAACTAAAATTG
TAGTTTAATGCGACCTGGTTTAAAACAGCAGGTAGCAGGAACAAAAGCCTTTCTATAAGG
TGTTAAAAACTCTCAAGTAGTTATATGTATGCATACTTCTGGGGTACCACAGCTTGAATC
TTTTCATGTACAGATTATATGATTTCATCTTAGATTTGCTACCTTAAAATGCAGTGTTTT
ATGTAGACTACATCTTGATTGTACTTTATGTGAAGTATTTTCTTAAAAAGGCTTTGGGTG
AAATTAAAATGTGTCTATTTTCCTAGAGATCTCCATTGTGATTTTCAGAGACGTAGCCTT
AAAAAGTCCGCCCTGAGAAATTCATTCAGTGTTTTTCCAGATGACCTCTATACATGGAGG
TCCTTGGGTAGGGAGACTCTTCCCTAGCTGAATTTTTGGGTTTAAGTTAGAATTTTCTTA
CAATTCAATTGAAATTTGGTTAGTAAAGTAGTGCCCGGTTCATAAAATGCTGACTTTGCT
AAGGCTCCACCCATATTTATTTAACACAGTTACAGAGATTTAAGGATATAGTATTGGTAG
TGATTAAGGGTTCAGACTCAAGTCAGTCAAGAAGGCAAGTCCCTTAACCTTCCTGGGCCT
TAGTGTCCTCACTAGAAAACAGGGATAATAATAGTAACTACCTCAGGGTTGTTCAAAGGA
TAAAAGGAGATAAAGTGTGTAAGATACTTAGCTTGAGTGCCTGGCACATAATGAGTACTC
CATAAATGTTAACTACTATTATTATTAACATTTACTGCAGTGAGTCTTAGGGATATGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGGAGTTGAGGGCTCAGGGTTCAGGTTAAAGAGGCACTGTCAACTTATGTATAAAAG
TATAACATGGGTTTTTCCTTTTTCTACTTGAAAAGGACCAGATTTTAAAAATAACCGTAT
GTAATTTAAAAGTTTGAATTTAAAGCAGAGAAAAACTTCTGCTTTTAGAAACTAAAATTG
TAGTTTAATGCGACCTGGTTTAAAACAGCAGGTAGCAGGAACAAAAGCCTTTCTATAAGG
TGTTAAAAACTCTCAAGTAGTTATATGTATGCATACTTCTGGGGTACCACAGCTTGAATC
TTTTCATGTACAGATTATATGATTTCATCTTAGATTTGCTACCTTAAAATGCAGTGTTTT
ATGTAGACTACATCTTGATTGTACTTTATGTGAAGTATTTTCTTAAAAAGGCTTTGGGTG
AAATTAAAATGTGTCTATTTTCCTAGAGATCTCCATTGTGATTTTCAGAGACGTAGCCTT
AAAAAGTCCGCCCTGAGAAATTCATTCAGTGTTTTTCCAGATGACCTCTATACATGGAGG
TCCTTGGGTAGGGAGACTCTTCCCTAGCTGAATTTTTGGGTTTAAGTTAGAATTTTCTTA
CAATTCAATTGAAATTTGGTTAGTAAAGTAGTGCCCGGTTCATAAAATGCTGACTTTGCT
AAGGCTCCACCCATATTTATTTAACACAGTTACAGAGATTTAAGGATATAGTATTGGTAG
TGATTAAGGGTTCAGACTCAAGTCAGTCAAGAAGGCAAGTCCCTTAACCTTCCTGGGCCT
TAGTGTCCTCACTAGAAAACAGGGATAATAATAGTAACTACCTCAGGGTTGTTCAAAGGA
TAAAAGGAGATAAAGTGTGTAAGATACTTAGCTTGAGTGCCTGGCACATAATGAGTACTC
CATAAATGTTAACTACTATTATTATTAACATTTACTGCAGTGAGTCTTAGGGATATGCAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               115-549, gnl|bosTau2|chr16 (42764075-42763640)
               

               
               115-549, gnl|Hg17|chr1 (175805724-175805299)
               


               
               699-944, gnl|bosTau2|chr16 (42763199-42762949)
               

               
               699-944, gnl|Hg17|chr1 (175805131-175804886)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-549, gnl|bosTau2|chr16 (42764075-42763640)
               

               
               115-549, gnl|Hg17|chr1 (175805724-175805299)
               


               
               699-944, gnl|bosTau2|chr16 (42763199-42762949)
               

               
               699-944, gnl|Hg17|chr1 (175805131-175804886)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               hlv (0.139256)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               tra (0.123092)

	115-549, gnl\|bosTau2\|chr16 (42764075-42763640)
	115-549, gnl\|Hg17\|chr1 (175805724-175805299)

	699-944, gnl\|bosTau2\|chr16 (42763199-42762949)
	699-944, gnl\|Hg17\|chr1 (175805131-175804886)