Non-Coding RNA Search

Ss1.1-Pig4-TMW8013E16.3

Sequence:


               
               TGGGGGGAATTAAAAGGGAGGGATAAAAATATATATATATAAATCTATTTTTAGTCTGGA
AAGACTTTGTTTAAATGAAAGGTGCGCTATCCCTTTTGATTCTATTTTAAAATTAACTCC
AAATTTGTTCTAATAACAGTGAAATTTAAATGTGAAATTGAACTGAACAAACTCATCTCA
CAAGGACAGGGGTGGCTTAGATCCTTAGCCCAGCTTTCACAGTTCAGAGACTCTAGACCC
GGGGTTGGGAGAGCAGACCAACCACAGCAAACCATTCCTTTGTCATGAATTTGCCCCAAA
GTGGGAAAGTCGAGGGGGAGGGAAGTGGGGATGGTCTGTGCTTTCAAGAGTGGGAGAATG
ATGTTTAAACACAAAAATAAAATCGTGCTCATTTCCAGAAACACTATTTATTTATTATTC
TTTAAAATTTTTCTCTCTCTTAGGGGGTGAAATTGGCAGATGCCCCAAGGTCATAGTTGT
GGCCTGTGGGGGCCCCAAGCGTCCCGTTAAGTGGCTCAGCCAGCAGGGTCAAGGGCTGGC
AGCCTCTGGGCATGTTCCAGGCAGCTGTGCCCTGAACCCCCAGGACAGACAGGCGGAACC
GAAGCTGTAGGAGTGGACACGGGGAGGGACAGTGTCAGGTGCCATCATGTGGGGTCAGCT
GACCAGGAACACCCACTCTACGCTTTTTTCTTTTGCTTTCATTTTTATAAAGGAAAAGGG
GGCCTGCCAGTTGAGCAGCCCCATGCTACATGATTCTTTATGTTGTATTGTTGTTTTGTT
TTGTAAATTGTATAATTTTTAAATGTCTTGGTTTAAAAAAAAAATACAAAAAAAATCTTG
TTAAGGCCTTAAGAAGGGGTTAGTGCATCTTTCAGGGGTCACTCTGCCGTGGGGATAAAA
TAGCTGTTTCACAAACAGTTTTATTTAAAAAACAAAACAAAAAAATCAAAAAAATAATAA
ACTTCATTTTAACCTTGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGGGAATTAAAAGGGAGGGATAAAAATATATATATATAAATCTATTTTTAGTCTGGA
AAGACTTTGTTTAAATGAAAGGTGCGCTATCCCTTTTGATTCTATTTTAAAATTAACTCC
AAATTTGTTCTAATAACAGTGAAATTTAAATGTGAAATTGAACTGAACAAACTCATCTCA
CAAGGACAGGGGTGGCTTAGATCCTTAGCCCAGCTTTCACAGTTCAGAGACTCTAGACCC
GGGGTTGGGAGAGCAGACCAACCACAGCAAACCATTCCTTTGTCATGAATTTGCCCCAAA
GTGGGAAAGTCGAGGGGGAGGGAAGTGGGGATGGTCTGTGCTTTCAAGAGTGGGAGAATG
ATGTTTAAACACAAAAATAAAATCGTGCTCATTTCCAGAAACACTATTTATTTATTATTC
TTTAAAATTTTTCTCTCTCTTAGGGGGTGAAATTGGCAGATGCCCCAAGGTCATAGTTGT
GGCCTGTGGGGGCCCCAAGCGTCCCGTTAAGTGGCTCAGCCAGCAGGGTCAAGGGCTGGC
AGCCTCTGGGCATGTTCCAGGCAGCTGTGCCCTGAACCCCCAGGACAGACAGGCGGAACC
GAAGCTGTAGGAGTGGACACGGGGAGGGACAGTGTCAGGTGCCATCATGTGGGGTCAGCT
GACCAGGAACACCCACTCTACGCTTTTTTCTTTTGCTTTCATTTTTATAAAGGAAAAGGG
GGCCTGCCAGTTGAGCAGCCCCATGCTACATGATTCTTTATGTTGTATTGTTGTTTTGTT
TTGTAAATTGTATAATTTTTAAATGTCTTGGTTTAAAAAAAAAATACAAAAAAAATCTTG
TTAAGGCCTTAAGAAGGGGTTAGTGCATCTTTCAGGGGTCACTCTGCCGTGGGGATAAAA
TAGCTGTTTCACAAACAGTTTTATTTAAAAAACAAAACAAAAAAATCAAAAAAATAATAA
ACTTCATTTTAACCTTGAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-115, + strand, RNAz p=0.98261
               

               
               873-977, - strand, RNAz p=0.691035

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, + strand, RNAz p=0.98261
               

               
               873-977, - strand, RNAz p=0.691035

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005650, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005650, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-470, gnl|bosTau2|chr5 (68572513-68572028)
               

               
               1-470, gnl|Hg17|chr22 (40881597-40881106)
               

               
               1-470, gnl|Mm7|chr15 (82893907-82893429)
               


               
               480-977, gnl|bosTau2|chr5 (68571991-68571474)
               

               
               480-977, gnl|Hg17|chr22 (40881079-40880517)
               

               
               480-977, gnl|Mm7|chr15 (82893392-82892844)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-470, gnl|bosTau2|chr5 (68572513-68572028)
               

               
               1-470, gnl|Hg17|chr22 (40881597-40881106)
               

               
               1-470, gnl|Mm7|chr15 (82893907-82893429)
               


               
               480-977, gnl|bosTau2|chr5 (68571991-68571474)
               

               
               480-977, gnl|Hg17|chr22 (40881079-40880517)
               

               
               480-977, gnl|Mm7|chr15 (82893392-82892844)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fty (0.351679)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	1-115, + strand, RNAz p=0.98261
	873-977, - strand, RNAz p=0.691035

	1-470, gnl\|bosTau2\|chr5 (68572513-68572028)
	1-470, gnl\|Hg17\|chr22 (40881597-40881106)
	1-470, gnl\|Mm7\|chr15 (82893907-82893429)

	480-977, gnl\|bosTau2\|chr5 (68571991-68571474)
	480-977, gnl\|Hg17\|chr22 (40881079-40880517)
	480-977, gnl\|Mm7\|chr15 (82893392-82892844)

	fty (0.351679)
	cga (0.279096)
	ece (0.229305)
	col (0.195008)
	sto (0.179824)
	fbs (0.175346)
	sin (0.174948)
	eye (0.170503)
	fat (0.147427)
	pla (0.133672)
	nmm (0.132802)
	med (0.116252)
	cty (0.10408)