Ss1.1-Pig4-TMW8013I22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTTTAATTCGAGAGCAGGCCGGCACGCCCCCTGCCCGCCCCCCAGCCTGGCCCCGGCG GCTCCCCCAGCGGGGGCAGAGCAGTCAGAAGGGGTTCCGGATGCGGGCTGCCACGAGCAC GAGGATCTCCCCGATCTTCCGCTGCCAGTTGGTGATGTCCTTGGACGTGGCGCACCACAG CTCCCCGTGCCGGGGCTCGGCGTTCTCGCAGCGCCGCCTCACCTCCTCCCGCTGCTCCTC CGTGCCATGCTGCAGCTCAAACTTGTAGAAGAAGGCCCAGGCGTCCCCCAGGTCTGAGTC GATCTTCACCGTGCGGTGGAACCACTCCCTGGCCTTGGTGATCTTGCGTTCGCTCCAGAA CAGCTTGGCCACAGCCAGGAGCACGTGGGGGTCGTGCTCACACTTCTTCAGGGCATCCAC ACTCTTGGTCTTCCTCTGGGGTCTCGCTTCCAGGAAGATGGCTTCGGACCAGAGGACCCC GGAGCTGGGGCACTCCTGCAGCGCCTTGGCCATCAGCGTGCTGGCGATGTTCTTCAGGCC CGCACGGTACTCCAGCCTCACGGACTCCAGCCACAGGCCGGGGTTCTTCGGGTTCTTCAA GCGGGACTTCTCCAAGATGGCCCGGGCTCGGGTCAGCTGCCCGATCTTCTCCTCCAGCCG GGAGAGCAAAAGCCACAGGGGTGTGGAGTGGGGACATTTCTTCAACCCCTGGTTGTAGGC TTCCCGCGCCTTCTCCATGAGCTCCTCCTGCTCCTCGATCTGCCCCTTCATCATCCAGAG CTTGGGGAAGTCCTCGTAGTGCTTCAGCGCCTCCTCGCACAGCTCCTGGGCGGCCGCCAG GTTCCCCAGCACCCACTCCAGCTTCACAGACTTCATGAACACCCGGGCTGTGGGCGCGCT GCTCCGCGCCTTGGCCAGCAGCCGGCGGGCCCGCTCATACTCGTTGTTCTCGGATTCCAG CTTCACGGCCGCCAGCCAGATCTCCTCGCTGTTGGGGTTGGCCTGGAAGGCCAGAGCCAG GATGCTCCTTGCTGCAGGCACGTCCCCCGCAAGCCACTTGGACTTGGCACCCATGAGCCA CAGCACCTCCGCTTTGGGGCAGTGGGCCACCGCCCTCTGCAGCAGGGCCTCCAGGGACTC CCTGGTGCCGTGGTTCTTCTCAAAGTAGGCAGCTCGCAGCCACACGCTCTTCTTGCTGGG GAAGACCTGCAGCGCGTAGGCGTAGATGGCTCGGGCGCACTCCAGGGCGTTGTGGGCCAC ACAACTGTCCGCATCTTCCATCCACGTGTGCTTCCGGTCCTCCTCCTCGATGCCGATGCC AATCACAGCACGCATGACCGCCTGGCAGGTGGCCACACTCCCAGCCTTGTCGCACTCCTC GGCATCCTGGATCCACTGCTCCCGGTTGATCTCCACGCCGTTGGCCCGCAGGGAGGTGAT GGCCCGGTCGATGATCTTCTCCACCATCTGCGTGTTCCCGTTGGCCTCCTCCAGCTTGGC AGCCGTGATCCAGATGTGTCGGTCGGTGGGGATGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTTTAATTCGAGAGCAGGCCGGCACGCCCCCTGCCCGCCCCCCAGCCTGGCCCCGGCG GCTCCCCCAGCGGGGGCAGAGCAGTCAGAAGGGGTTCCGGATGCGGGCTGCCACGAGCAC GAGGATCTCCCCGATCTTCCGCTGCCAGTTGGTGATGTCCTTGGACGTGGCGCACCACAG CTCCCCGTGCCGGGGCTCGGCGTTCTCGCAGCGCCGCCTCACCTCCTCCCGCTGCTCCTC CGTGCCATGCTGCAGCTCAAACTTGTAGAAGAAGGCCCAGGCGTCCCCCAGGTCTGAGTC GATCTTCACCGTGCGGTGGAACCACTCCCTGGCCTTGGTGATCTTGCGTTCGCTCCAGAA CAGCTTGGCCACAGCCAGGAGCACGTGGGGGTCGTGCTCACACTTCTTCAGGGCATCCAC ACTCTTGGTCTTCCTCTGGGGTCTCGCTTCCAGGAAGATGGCTTCGGACCAGAGGACCCC GGAGCTGGGGCACTCCTGCAGCGCCTTGGCCATCAGCGTGCTGGCGATGTTCTTCAGGCC CGCACGGTACTCCAGCCTCACGGACTCCAGCCACAGGCCGGGGTTCTTCGGGTTCTTCAA GCGGGACTTCTCCAAGATGGCCCGGGCTCGGGTCAGCTGCCCGATCTTCTCCTCCAGCCG GGAGAGCAAAAGCCACAGGGGTGTGGAGTGGGGACATTTCTTCAACCCCTGGTTGTAGGC TTCCCGCGCCTTCTCCATGAGCTCCTCCTGCTCCTCGATCTGCCCCTTCATCATCCAGAG CTTGGGGAAGTCCTCGTAGTGCTTCAGCGCCTCCTCGCACAGCTCCTGGGCGGCCGCCAG GTTCCCCAGCACCCACTCCAGCTTCACAGACTTCATGAACACCCGGGCTGTGGGCGCGCT GCTCCGCGCCTTGGCCAGCAGCCGGCGGGCCCGCTCATACTCGTTGTTCTCGGATTCCAG CTTCACGGCCGCCAGCCAGATCTCCTCGCTGTTGGGGTTGGCCTGGAAGGCCAGAGCCAG GATGCTCCTTGCTGCAGGCACGTCCCCCGCAAGCCACTTGGACTTGGCACCCATGAGCCA CAGCACCTCCGCTTTGGGGCAGTGGGCCACCGCCCTCTGCAGCAGGGCCTCCAGGGACTC CCTGGTGCCGTGGTTCTTCTCAAAGTAGGCAGCTCGCAGCCACACGCTCTTCTTGCTGGG GAAGACCTGCAGCGCGTAGGCGTAGATGGCTCGGGCGCACTCCAGGGCGTTGTGGGCCAC ACAACTGTCCGCATCTTCCATCCACGTGTGCTTCCGGTCCTCCTCCTCGATGCCGATGCC AATCACAGCACGCATGACCGCCTGGCAGGTGGCCACACTCCCAGCCTTGTCGCACTCCTC GGCATCCTGGATCCACTGCTCCCGGTTGATCTCCACGCCGTTGGCCCGCAGGGAGGTGAT GGCCCGGTCGATGATCTTCTCCACCATCTGCGTGTTCCCGTTGGCCTCCTCCAGCTTGGC AGCCGTGATCCAGATGTGTCGGTCGGTGGGGATGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 364-1144, - strand, RNAz p=0.882685 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 364-1144, - strand, RNAz p=0.882685 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 53-244, gnl|bosTau2|chr13 (41506370-41506179) | |
| 53-244, gnl|Hg17|chr20 (62134838-62134633) | |
| 53-244, gnl|Mm7|chr2 (182156516-182156329) | |
| 364-483, gnl|bosTau2|chr13 (41503920-41503801) | |
| 364-483, gnl|canFam2|chr24 (50529046-50529194) | |
| 364-483, gnl|danRer3|chr23 (3508691-3508821) | |
| 364-483, gnl|echTel1|scaffold_301845 (7884-7740) | |
| 364-483, gnl|fr1|chrUn (58233221-58233088) | |
| 364-483, gnl|galGal2|chrUn (67514548-67514695) | |
| 364-483, gnl|hg17|chr20 (62131146-62131297) | |
| 364-483, gnl|Hg17|chr20 (62131289-62131170) | |
| 364-483, gnl|mm7|chr2 (182153325-182153469) | |
| 364-483, gnl|Mm7|chr2 (182153461-182153342) | |
| 364-483, gnl|panTro1|chr21 (65204178-65204329) | |
| 364-483, gnl|rheMac2|chr10 (313714-313563) | |
| 364-483, gnl|rn3|chr3 (170707480-170707624) | |
| 364-483, gnl|tetNig1|chr9 (5728385-5728252) | |
| 364-483, gnl|xenTro1|scaffold_1489 (82606-82752) | |
| 702-887, gnl|bosTau2|chr13 (41501756-41501571) | |
| 702-887, gnl|Hg17|chr20 (62128959-62128774) | |
| 702-887, gnl|Mm7|chr2 (182150514-182150329) | |
| 1002-1144, gnl|bosTau2|chr13 (41499938-41499796) | |
| 1002-1144, gnl|canFam2|chr24 (50523599-50523777) | |
| 1002-1144, gnl|danRer3|chr23 (3487550-3487702) | |
| 1002-1144, gnl|dasNov1|scaffold_227029 (3379-3550) | |
| 1002-1144, gnl|echTel1|scaffold_301845 (10593-10428) | |
| 1002-1144, gnl|fr1|chrUn (58235428-58235273) | |
| 1002-1144, gnl|galGal2|chr20 (9102656-9102473) | |
| 1002-1144, gnl|hg17|chr20 (62126324-62126502) | |
| 1002-1144, gnl|Hg17|chr20 (62126491-62126349) | |
| 1002-1144, gnl|loxAfr1|scaffold_39187 (1027-856) | |
| 1002-1144, gnl|mm7|chr2 (182148174-182148351) | |
| 1002-1144, gnl|Mm7|chr2 (182148340-182148198) | |
| 1002-1144, gnl|monDom2|scaffold_1 (184931228-184931404) | |
| 1002-1144, gnl|oryCun1|scaffold_169983 (5997-5825) | |
| 1002-1144, gnl|panTro1|chr21 (65199357-65199535) | |
| 1002-1144, gnl|rheMac2|chr10 (318894-318718) | |
| 1002-1144, gnl|rn3|chr3 (170700869-170701046) | |
| 1002-1144, gnl|tetNig1|chr9 (5730131-5729977) | |
| 1002-1144, gnl|xenTro1|scaffold_1489 (79512-79704) | |
| 1386-1536, gnl|bosTau2|chr13 (41491091-41490941) | |
| 1386-1536, gnl|canFam2|chr24 (50508964-50509215) | |
| 1386-1536, gnl|danRer3|chr23 (3482466-3482699) | |
| 1386-1536, gnl|dasNov1|scaffold_101437 (583-336) | |
| 1386-1536, gnl|echTel1|scaffold_301845 (14227-13995) | |
| 1386-1536, gnl|fr1|chrUn (58236514-58236277) | |
| 1386-1536, gnl|galGal2|chr20 (9105994-9105739) | |
| 1386-1536, gnl|hg17|chr20 (62113061-62113308) | |
| 1386-1536, gnl|Hg17|chr20 (62113301-62113151) | |
| 1386-1536, gnl|loxAfr1|scaffold_39187 (11516-11270) | |
| 1386-1536, gnl|mm7|chr2 (182137770-182138030) | |
| 1386-1536, gnl|Mm7|chr2 (182138024-182137874) | |
| 1386-1536, gnl|monDom2|scaffold_1 (184914753-184915009) | |
| 1386-1536, gnl|oryCun1|scaffold_97872 (5129-4882) | |
| 1386-1536, gnl|panTro1|chr21 (65187156-65187403) | |
| 1386-1536, gnl|rheMac2|chr10 (331822-331575) | |
| 1386-1536, gnl|rn3|chr3 (170689883-170690142) | |
| 1386-1536, gnl|tetNig1|chr9 (5731422-5731198) | |
| 1386-1536, gnl|xenTro1|scaffold_1489 (78543-78786) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-244, gnl|bosTau2|chr13 (41506370-41506179) | |
| 53-244, gnl|Hg17|chr20 (62134838-62134633) | |
| 53-244, gnl|Mm7|chr2 (182156516-182156329) | |
| 364-483, gnl|bosTau2|chr13 (41503920-41503801) | |
| 364-483, gnl|canFam2|chr24 (50529046-50529194) | |
| 364-483, gnl|danRer3|chr23 (3508691-3508821) | |
| 364-483, gnl|echTel1|scaffold_301845 (7884-7740) | |
| 364-483, gnl|fr1|chrUn (58233221-58233088) | |
| 364-483, gnl|galGal2|chrUn (67514548-67514695) | |
| 364-483, gnl|hg17|chr20 (62131146-62131297) | |
| 364-483, gnl|Hg17|chr20 (62131289-62131170) | |
| 364-483, gnl|mm7|chr2 (182153325-182153469) | |
| 364-483, gnl|Mm7|chr2 (182153461-182153342) | |
| 364-483, gnl|panTro1|chr21 (65204178-65204329) | |
| 364-483, gnl|rheMac2|chr10 (313714-313563) | |
| 364-483, gnl|rn3|chr3 (170707480-170707624) | |
| 364-483, gnl|tetNig1|chr9 (5728385-5728252) | |
| 364-483, gnl|xenTro1|scaffold_1489 (82606-82752) | |
| 702-887, gnl|bosTau2|chr13 (41501756-41501571) | |
| 702-887, gnl|Hg17|chr20 (62128959-62128774) | |
| 702-887, gnl|Mm7|chr2 (182150514-182150329) | |
| 1002-1144, gnl|bosTau2|chr13 (41499938-41499796) | |
| 1002-1144, gnl|canFam2|chr24 (50523599-50523777) | |
| 1002-1144, gnl|danRer3|chr23 (3487550-3487702) | |
| 1002-1144, gnl|dasNov1|scaffold_227029 (3379-3550) | |
| 1002-1144, gnl|echTel1|scaffold_301845 (10593-10428) | |
| 1002-1144, gnl|fr1|chrUn (58235428-58235273) | |
| 1002-1144, gnl|galGal2|chr20 (9102656-9102473) | |
| 1002-1144, gnl|hg17|chr20 (62126324-62126502) | |
| 1002-1144, gnl|Hg17|chr20 (62126491-62126349) | |
| 1002-1144, gnl|loxAfr1|scaffold_39187 (1027-856) | |
| 1002-1144, gnl|mm7|chr2 (182148174-182148351) | |
| 1002-1144, gnl|Mm7|chr2 (182148340-182148198) | |
| 1002-1144, gnl|monDom2|scaffold_1 (184931228-184931404) | |
| 1002-1144, gnl|oryCun1|scaffold_169983 (5997-5825) | |
| 1002-1144, gnl|panTro1|chr21 (65199357-65199535) | |
| 1002-1144, gnl|rheMac2|chr10 (318894-318718) | |
| 1002-1144, gnl|rn3|chr3 (170700869-170701046) | |
| 1002-1144, gnl|tetNig1|chr9 (5730131-5729977) | |
| 1002-1144, gnl|xenTro1|scaffold_1489 (79512-79704) | |
| 1386-1536, gnl|bosTau2|chr13 (41491091-41490941) | |
| 1386-1536, gnl|canFam2|chr24 (50508964-50509215) | |
| 1386-1536, gnl|danRer3|chr23 (3482466-3482699) | |
| 1386-1536, gnl|dasNov1|scaffold_101437 (583-336) | |
| 1386-1536, gnl|echTel1|scaffold_301845 (14227-13995) | |
| 1386-1536, gnl|fr1|chrUn (58236514-58236277) | |
| 1386-1536, gnl|galGal2|chr20 (9105994-9105739) | |
| 1386-1536, gnl|hg17|chr20 (62113061-62113308) | |
| 1386-1536, gnl|Hg17|chr20 (62113301-62113151) | |
| 1386-1536, gnl|loxAfr1|scaffold_39187 (11516-11270) | |
| 1386-1536, gnl|mm7|chr2 (182137770-182138030) | |
| 1386-1536, gnl|Mm7|chr2 (182138024-182137874) | |
| 1386-1536, gnl|monDom2|scaffold_1 (184914753-184915009) | |
| 1386-1536, gnl|oryCun1|scaffold_97872 (5129-4882) | |
| 1386-1536, gnl|panTro1|chr21 (65187156-65187403) | |
| 1386-1536, gnl|rheMac2|chr10 (331822-331575) | |
| 1386-1536, gnl|rn3|chr3 (170689883-170690142) | |
| 1386-1536, gnl|tetNig1|chr9 (5731422-5731198) | |
| 1386-1536, gnl|xenTro1|scaffold_1489 (78543-78786) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cty (0.20816) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) |