Non-Coding RNA Search

Ss1.1-Pig4-TMW8013J11.3.5

Sequence:


               
               GTTGAAGGTATGTAAATCAGCATAGTTATGTATAGCTTAACCTTGATTTAGAAGGTCTTA
ACTCTGACTATACATTGACATCTCGTAAGAAGCTTTGGAAAACATTCTATTTTTAAACAA
TGTTTATAAGTGGACTTCCGTTGTCACTTTGGGCTTTATATTTTCATAGAGTCTTTATGG
AAAAATAGAATTTATTTTCCACTCTTGTAGCTGTGGCTGCCGAACATTGTCACCCTGATT
TATTTTTTGTTTAGTAGCTTTACCCATCAATTGTTACGGAATCAGACTTGATGTTTTTAA
ACCAAGCATTTTGATTTTAGCTTAGAATTACATATTAGAGGCATTAAGGGTATGTCTTCT
GATCAGAACACTTTATTGATAAACCTACTGTGAGGACATATTCCTAAGCAACCTGGATGT
TAAATTTATGTGACTAGTTTTAGAGGAATGATAAAGAAAAATTGAGAATTTCAAAATGTT
TCTTGAGTCATTGGTCTTTTGACATCTCAAATGTCGATTAGAATAATTGGAATCACTTTT
TAGATTTTTCAAGTTACCTTCCTTGGGAAGTTTGTGCAGTGTTATTAGTTTAGCTTTTCT
TATAGGATAATGGTTTGCTAGTTTAAAACTGTAACCAAACTAACTGGTCAGACAACATAT
ATCTAAAACATTTAAAACATTAGAAAATTTGGGAAGGTTATAACCTAAACATTTTCACTG
ATACCTTTTGTTATTTATAGAACTGACATTTGTGTGTTTAACATACTTCTGGAAATATAT
GCCTTTCTTAAAACCGTTAGCATAACCGTGTATTCAATACCATGGCCTGTCTGTCGAATT
GAATATCTTAGAGCAGGTTACCCGGAGCACAGTCTGGGCTGTGTTTAGGGTAAATGCGGT
AATGTTTAGTTTTCTACTTTGTCTCGTATGAGGTAGAAGCCAAGTCTATGTTATGTTTGT
CTATAGAAGGAAAAATGCTAATATTAAAGTAATTTCTTATAACTGTGAATCACTCACTTA
TTTTTCCAGTAATTGATATTGTACATTCCTAGTGCTATGAGGTATGTATGTAACTTTTAT
AGTTTTTCAGCCAAAAGTTAAAAGGATTTCATTTGATCAGGGCTCTTTAATCTCATTTTC
ATTTGCTTTGTCTAACTGTAGTTATTTATTTCTGTATTAACAAGCTAAGCTTATGTTAAT
GACTTGTACACTAATAAAGAATTGAATGTAGCTGTTGGTAGTGAACCCAGTCGCCGGTGT
ATTTAAAACAAAATATGGGAGTGATTTGCTGCTATATTTCCTTAGATAACAGAGGAAAAA
TAGAACCTAATAATGATCATGAATTTTAGGGAAAGTACTGGCAAAACATGGGGTCAACTC
TGGTTTCTCATGTGAATGAGGAAAGAAAGATTCGGATTTCCAGCTAAAGACCTCTCAATA
GTTTTATGGAGAGAGAATCTGCCTTTTTAGAACTATTAGCAAAATGTGAAAGCCAGTTTT
GTGCTTTCCTTTGTGAATTTGGCTTCGTTCCACTCATATATTAACCCACGTAAAGATGCA
TCGCTTACATCTTATGTGTTGATCCAATTCAACACAAAGGTAAATTAAAATAGAGAATTT
ATTATTTGCCAAAGAGAATTTAGGAAAGAATTTTTATCCAATTTTTCTGCAAATGTTTAA
TTTCATTTGGCTTTGTGCTACCTCCCTTCTTTTCTGTCCTTTAATATAGCTTAAACCATT
GGCAAACTTTAGAAAATGAGAAAAAAAAATTTCAAAAAGGACATGGTAGGAGTTCCCTTG
TGCTGTAGCGGGTTGAGGATCTGGCATTGTCACTGTAGTGGCTCAGGTCACTGCCGTGGC
ATGGGTTCGATCCCTGGCCCAGAAATTTCCACATGCAGCTAAAAAAAAAAAAGGACATGG
AATTTAGTATTATATGATTTCACCTCTTAGGTGGGTCTAAAGAAATACAACTTTATGTTG
TTAATATATGATCATCTGACTTCCTTGATTCCTTTTTTTCTTTTTAAATATGTAATCGGG
TGGTTTTATTTGTTTTGGGGGGGAACATCGGTTTCTTGTTTCCACTTTTCTCTGCTATTT
GCGTTTCTTTTTTATGTTCAGTGTTTCAGAATACGGTTTGTATTTAAAGATTTTAAAATA
CCAAAACTGTAACTGAGTACAGTGGATTTTTTTCTGGTATGATGTTAATATTATACAATG
AGATGTATAAAGTGTTGTCAATTTGATTATTGACACATATGTTTACAAATAAACAGTGGT
GTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAGGTATGTAAATCAGCATAGTTATGTATAGCTTAACCTTGATTTAGAAGGTCTTA
ACTCTGACTATACATTGACATCTCGTAAGAAGCTTTGGAAAACATTCTATTTTTAAACAA
TGTTTATAAGTGGACTTCCGTTGTCACTTTGGGCTTTATATTTTCATAGAGTCTTTATGG
AAAAATAGAATTTATTTTCCACTCTTGTAGCTGTGGCTGCCGAACATTGTCACCCTGATT
TATTTTTTGTTTAGTAGCTTTACCCATCAATTGTTACGGAATCAGACTTGATGTTTTTAA
ACCAAGCATTTTGATTTTAGCTTAGAATTACATATTAGAGGCATTAAGGGTATGTCTTCT
GATCAGAACACTTTATTGATAAACCTACTGTGAGGACATATTCCTAAGCAACCTGGATGT
TAAATTTATGTGACTAGTTTTAGAGGAATGATAAAGAAAAATTGAGAATTTCAAAATGTT
TCTTGAGTCATTGGTCTTTTGACATCTCAAATGTCGATTAGAATAATTGGAATCACTTTT
TAGATTTTTCAAGTTACCTTCCTTGGGAAGTTTGTGCAGTGTTATTAGTTTAGCTTTTCT
TATAGGATAATGGTTTGCTAGTTTAAAACTGTAACCAAACTAACTGGTCAGACAACATAT
ATCTAAAACATTTAAAACATTAGAAAATTTGGGAAGGTTATAACCTAAACATTTTCACTG
ATACCTTTTGTTATTTATAGAACTGACATTTGTGTGTTTAACATACTTCTGGAAATATAT
GCCTTTCTTAAAACCGTTAGCATAACCGTGTATTCAATACCATGGCCTGTCTGTCGAATT
GAATATCTTAGAGCAGGTTACCCGGAGCACAGTCTGGGCTGTGTTTAGGGTAAATGCGGT
AATGTTTAGTTTTCTACTTTGTCTCGTATGAGGTAGAAGCCAAGTCTATGTTATGTTTGT
CTATAGAAGGAAAAATGCTAATATTAAAGTAATTTCTTATAACTGTGAATCACTCACTTA
TTTTTCCAGTAATTGATATTGTACATTCCTAGTGCTATGAGGTATGTATGTAACTTTTAT
AGTTTTTCAGCCAAAAGTTAAAAGGATTTCATTTGATCAGGGCTCTTTAATCTCATTTTC
ATTTGCTTTGTCTAACTGTAGTTATTTATTTCTGTATTAACAAGCTAAGCTTATGTTAAT
GACTTGTACACTAATAAAGAATTGAATGTAGCTGTTGGTAGTGAACCCAGTCGCCGGTGT
ATTTAAAACAAAATATGGGAGTGATTTGCTGCTATATTTCCTTAGATAACAGAGGAAAAA
TAGAACCTAATAATGATCATGAATTTTAGGGAAAGTACTGGCAAAACATGGGGTCAACTC
TGGTTTCTCATGTGAATGAGGAAAGAAAGATTCGGATTTCCAGCTAAAGACCTCTCAATA
GTTTTATGGAGAGAGAATCTGCCTTTTTAGAACTATTAGCAAAATGTGAAAGCCAGTTTT
GTGCTTTCCTTTGTGAATTTGGCTTCGTTCCACTCATATATTAACCCACGTAAAGATGCA
TCGCTTACATCTTATGTGTTGATCCAATTCAACACAAAGGTAAATTAAAATAGAGAATTT
ATTATTTGCCAAAGAGAATTTAGGAAAGAATTTTTATCCAATTTTTCTGCAAATGTTTAA
TTTCATTTGGCTTTGTGCTACCTCCCTTCTTTTCTGTCCTTTAATATAGCTTAAACCATT
GGCAAACTTTAGAAAATGAGAAAAAAAAATTTCAAAAAGGACATGGTAGGAGTTCCCTTG
TGCTGTAGCGGGTTGAGGATCTGGCATTGTCACTGTAGTGGCTCAGGTCACTGCCGTGGC
ATGGGTTCGATCCCTGGCCCAGAAATTTCCACATGCAGCTAAAAAAAAAAAAGGACATGG
AATTTAGTATTATATGATTTCACCTCTTAGGTGGGTCTAAAGAAATACAACTTTATGTTG
TTAATATATGATCATCTGACTTCCTTGATTCCTTTTTTTCTTTTTAAATATGTAATCGGG
TGGTTTTATTTGTTTTGGGGGGGAACATCGGTTTCTTGTTTCCACTTTTCTCTGCTATTT
GCGTTTCTTTTTTATGTTCAGTGTTTCAGAATACGGTTTGTATTTAAAGATTTTAAAATA
CCAAAACTGTAACTGAGTACAGTGGATTTTTTTCTGGTATGATGTTAATATTATACAATG
AGATGTATAAAGTGTTGTCAATTTGATTATTGACACATATGTTTACAAATAAACAGTGGT
GTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               150-268, - strand, RNAz p=0.842384
               

               
               854-969, + strand, RNAz p=0.81766

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-268, - strand, RNAz p=0.842384
               

               
               854-969, + strand, RNAz p=0.81766

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               862-992, + strand, RNAmicro p=0.999451

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               862-992, + strand, RNAmicro p=0.999451

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC030520, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC030520, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-1667, gnl|bosTau2|chr17 (7340203-7338556)
               

               
               1-1667, gnl|Hg17|chr8 (124894676-124896342)
               

               
               1-1667, gnl|Mm7|chr15 (58520812-58522370)
               


               
               94-424, gnl|bosTau2|chr15 (42293533-42293212)
               

               
               94-424, gnl|Hg17|chr11 (73381182-73377826)
               


               
               2026-2293, gnl|bosTau2|chr15 (12283466-12283739)
               

               
               2026-2293, gnl|Hg17|chr8 (124896578-124896858)
               

               
               2026-2293, gnl|Mm7|chr15 (58522809-58523073)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1667, gnl|bosTau2|chr17 (7340203-7338556)
               

               
               1-1667, gnl|Hg17|chr8 (124894676-124896342)
               

               
               1-1667, gnl|Mm7|chr15 (58520812-58522370)
               


               
               94-424, gnl|bosTau2|chr15 (42293533-42293212)
               

               
               94-424, gnl|Hg17|chr11 (73381182-73377826)
               


               
               2026-2293, gnl|bosTau2|chr15 (12283466-12283739)
               

               
               2026-2293, gnl|Hg17|chr8 (124896578-124896858)
               

               
               2026-2293, gnl|Mm7|chr15 (58522809-58523073)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               jca (0.22792)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               jca (0.22792)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	150-268, - strand, RNAz p=0.842384
	854-969, + strand, RNAz p=0.81766

	1-1667, gnl\|bosTau2\|chr17 (7340203-7338556)
	1-1667, gnl\|Hg17\|chr8 (124894676-124896342)
	1-1667, gnl\|Mm7\|chr15 (58520812-58522370)

	94-424, gnl\|bosTau2\|chr15 (42293533-42293212)
	94-424, gnl\|Hg17\|chr11 (73381182-73377826)

	2026-2293, gnl\|bosTau2\|chr15 (12283466-12283739)
	2026-2293, gnl\|Hg17\|chr8 (124896578-124896858)
	2026-2293, gnl\|Mm7\|chr15 (58522809-58523073)

	liv (0.292569)
	lin (0.291206)
	spl (0.286369)
	sug (0.254582)
	jca (0.22792)
	sto (0.179824)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	tbr (0.154178)
	che (0.136314)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	cty (0.10408)