Non-Coding RNA Search

Ss1.1-Pig4-TMW8013J21.3

Sequence:


               
               ACAAAGAGGATGTGTTTATACACCAACATCACTTCTGACTCTGAGACAGACATTTCTTAT
TTGATTGATAAATATCCATTTGCATGGACATATCTGAAGTTTCTGGGGGAAATTAAACTT
CTACGACAAAATTGATGGTTCACAGTGATGATGTTGTCTTGGACAATATCGAGAATACAT
AAATGAAAACCAAAAAAGACGTGAAAGTGTAGAGAAATGTTTAGAAAATGAAAATTACTG
TGTTCCCTGTTTAATGGCCTTGCTTAGAGAGAATGGCATCAGAGAACCTACCCCAAAGGT
CCCCCTAGACACCCATCTCAGCCAGGCCAGCAGCGCCCTCATTTCCCCATGGCCTTTGTG
TTCTCTCTACTGACGGCCCTGGTGGTGTTCAGCTATGGCCCTGGGGCATCTCTGGGCTGT
GACCTGTCTCAGAACCACGTGCACGTCAGCAGGAAGAACCTGGTGCTTCTGCATCAGATG
AGGAGACTCTCCCCTTCCTTCTGTCTGAAGGACAGAAAAGACTTCGGGTTCCCCCAGGAG
ATGGTGGAAGGCAGCCAGCTGCAGAAGACCCAGGCCATCTCTGTCCTCCACGAGATGCTC
CAGCAGACCTTCCTCCTCTTCCACACGGAGCGCTCCTCTGCTGCCTGGGACTCCACCCTC
CTGGACAAGCTCTGCTCTGGACTCCATCAGCAGCTGGAAGACCTGGACCCCTGCTTGGTG
CAGGTGATGGGAGAGCAGACATCTGCCCTGGAAATGGCTGTGAAGAGGTACTTTGAGGGA
ATCCATCTCTACCTCCTCCTGGGAAGCTGGTGACATGTGGTGTGATGGGGGACCTGGTCG
CTTTTCATTGCAAAATTAATACATAAGATGTACAGTCATCTTTTCATTCGAGATTCTCAC
CGTGAAGTTAAGAGAAGATGAGTAACCAAATAGATGCAAATCCAGGACTAGAGAACCCAG
AGGAGGTGACCTTCAGGACAGGGACCGTCCTTACGCTCCTGTGGCCAACGACGCTCACCC
AAAGGGAGCTGGTGGCTGAGAAGAGAAGAATGTCCTGACTTGGGTCACATAACAAGTCAC
ATCTGGTTTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAGAGGATGTGTTTATACACCAACATCACTTCTGACTCTGAGACAGACATTTCTTAT
TTGATTGATAAATATCCATTTGCATGGACATATCTGAAGTTTCTGGGGGAAATTAAACTT
CTACGACAAAATTGATGGTTCACAGTGATGATGTTGTCTTGGACAATATCGAGAATACAT
AAATGAAAACCAAAAAAGACGTGAAAGTGTAGAGAAATGTTTAGAAAATGAAAATTACTG
TGTTCCCTGTTTAATGGCCTTGCTTAGAGAGAATGGCATCAGAGAACCTACCCCAAAGGT
CCCCCTAGACACCCATCTCAGCCAGGCCAGCAGCGCCCTCATTTCCCCATGGCCTTTGTG
TTCTCTCTACTGACGGCCCTGGTGGTGTTCAGCTATGGCCCTGGGGCATCTCTGGGCTGT
GACCTGTCTCAGAACCACGTGCACGTCAGCAGGAAGAACCTGGTGCTTCTGCATCAGATG
AGGAGACTCTCCCCTTCCTTCTGTCTGAAGGACAGAAAAGACTTCGGGTTCCCCCAGGAG
ATGGTGGAAGGCAGCCAGCTGCAGAAGACCCAGGCCATCTCTGTCCTCCACGAGATGCTC
CAGCAGACCTTCCTCCTCTTCCACACGGAGCGCTCCTCTGCTGCCTGGGACTCCACCCTC
CTGGACAAGCTCTGCTCTGGACTCCATCAGCAGCTGGAAGACCTGGACCCCTGCTTGGTG
CAGGTGATGGGAGAGCAGACATCTGCCCTGGAAATGGCTGTGAAGAGGTACTTTGAGGGA
ATCCATCTCTACCTCCTCCTGGGAAGCTGGTGACATGTGGTGTGATGGGGGACCTGGTCG
CTTTTCATTGCAAAATTAATACATAAGATGTACAGTCATCTTTTCATTCGAGATTCTCAC
CGTGAAGTTAAGAGAAGATGAGTAACCAAATAGATGCAAATCCAGGACTAGAGAACCCAG
AGGAGGTGACCTTCAGGACAGGGACCGTCCTTACGCTCCTGTGGCCAACGACGCTCACCC
AAAGGGAGCTGGTGGCTGAGAAGAGAAGAATGTCCTGACTTGGGTCACATAACAAGTCAC
ATCTGGTTTCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2067|emb|CAA40482.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2067|emb|CAA40482.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               556-672, - strand, RNAz p=0.982476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               556-672, - strand, RNAz p=0.982476

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-754, gnl|bosTau2|chr5 (73515796-73515069)
               

               
               10-754, gnl|Hg17|chr9 (21409900-21410639)
               

               
               10-754, gnl|Mm7|chr4 (88100740-88100016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-754, gnl|bosTau2|chr5 (73515796-73515069)
               

               
               10-754, gnl|Hg17|chr9 (21409900-21410639)
               

               
               10-754, gnl|Mm7|chr4 (88100740-88100016)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	10-754, gnl\|bosTau2\|chr5 (73515796-73515069)
	10-754, gnl\|Hg17\|chr9 (21409900-21410639)
	10-754, gnl\|Mm7\|chr4 (88100740-88100016)