Non-Coding RNA Search

Ss1.1-Pig4-TMW8013K21.3

Sequence:


               
               CGGCCGAGGTACTTCCAGACTCCCCCTCAGGACTGCCCAGTCTCTGCACCTCAAAGTTCG
CCTTTTCATTTCAAGCATAAGGCAATAAATACCTGCAGCAACGTGGGAGAAAGCAGTTGC
TATACTAGGAGAAAAGGCAGTAACAAAGCCAATTCATTTTGGAGGAAGCACAATTTCCAC
CTTATTTTTTTAACTTCGGCAGTCTGGGTATCTGTCTCTGTTGCTTCAGGGCATAAGCTG
ATCACCATCTAGTCAGGAAAGAAACCCTGCAGGGTTTTAGGGACATGAGTATATGCTGAT
TTGAATCCTCAGATGTCTTTAAGACTCCGTCTTGGGTCCACTGGAGTCAGTTGGTTGAAG
CAGCAAGATGGTAACCCTTCTGGTTTCCTCTTCTCTATGGGTTCTTCCCTGACTTTGGAC
TTAGCATGATTCATATTCATACTTGAACCTTTCTCGTTGCACCTCTCCTCAAAGCAACTC
TTGTGTCATTTGAAGAGTTCTTCAGACCATAGACCAAAAAATCACCCCTTTGAGGTGGTG
GCAGTGGGTGCCAGGAGAGAAGGGGTACCTACTGTCTGGGTCAGTGTCATTGAAACGGTC
GTCACCCCAGCTTGCTGTCCTTATATGTGCTTGTCTCGTCTCTCGTGACACTTGTTTTTT
TCCCTGCCCCTGGGGGTTGTCTTCAAGCTGTTGATTTCTGAGATTTGCAGATTTCTCAAT
GTGGTACTACTTTTTTGTCTGTAGGTTATTTCTCCAGGGGGAAAGGCAATAATTTCCTAA
AATCCACATGAATGTGAAAAAAAAGCAGTATGTTACTGGTTGTTGTTTTCGTCGTTGTTG
TTTTTTATAGTGCAAAATAAAAATAGTAAAAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGAGGTACTTCCAGACTCCCCCTCAGGACTGCCCAGTCTCTGCACCTCAAAGTTCG
CCTTTTCATTTCAAGCATAAGGCAATAAATACCTGCAGCAACGTGGGAGAAAGCAGTTGC
TATACTAGGAGAAAAGGCAGTAACAAAGCCAATTCATTTTGGAGGAAGCACAATTTCCAC
CTTATTTTTTTAACTTCGGCAGTCTGGGTATCTGTCTCTGTTGCTTCAGGGCATAAGCTG
ATCACCATCTAGTCAGGAAAGAAACCCTGCAGGGTTTTAGGGACATGAGTATATGCTGAT
TTGAATCCTCAGATGTCTTTAAGACTCCGTCTTGGGTCCACTGGAGTCAGTTGGTTGAAG
CAGCAAGATGGTAACCCTTCTGGTTTCCTCTTCTCTATGGGTTCTTCCCTGACTTTGGAC
TTAGCATGATTCATATTCATACTTGAACCTTTCTCGTTGCACCTCTCCTCAAAGCAACTC
TTGTGTCATTTGAAGAGTTCTTCAGACCATAGACCAAAAAATCACCCCTTTGAGGTGGTG
GCAGTGGGTGCCAGGAGAGAAGGGGTACCTACTGTCTGGGTCAGTGTCATTGAAACGGTC
GTCACCCCAGCTTGCTGTCCTTATATGTGCTTGTCTCGTCTCTCGTGACACTTGTTTTTT
TCCCTGCCCCTGGGGGTTGTCTTCAAGCTGTTGATTTCTGAGATTTGCAGATTTCTCAAT
GTGGTACTACTTTTTTGTCTGTAGGTTATTTCTCCAGGGGGAAAGGCAATAATTTCCTAA
AATCCACATGAATGTGAAAAAAAAGCAGTATGTTACTGGTTGTTGTTTTCGTCGTTGTTG
TTTTTTATAGTGCAAAATAAAAATAGTAAAAGGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               655-765, - strand, RNAz p=0.991353

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               655-765, - strand, RNAz p=0.991353

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               22-299, gnl|bosTau2|chr10 (37047529-37047257)
               

               
               22-299, gnl|Hg17|chr1 (225094109-225094388)
               

               
               22-299, gnl|Mm7|chr19 (53441025-53441295)
               


               
               382-823, gnl|bosTau2|chr18 (15264523-15264087)
               

               
               382-823, gnl|Hg17|chr10 (112260786-112261236)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-299, gnl|bosTau2|chr10 (37047529-37047257)
               

               
               22-299, gnl|Hg17|chr1 (225094109-225094388)
               

               
               22-299, gnl|Mm7|chr19 (53441025-53441295)
               


               
               382-823, gnl|bosTau2|chr18 (15264523-15264087)
               

               
               382-823, gnl|Hg17|chr10 (112260786-112261236)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mgm (0.180343)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	22-299, gnl\|bosTau2\|chr10 (37047529-37047257)
	22-299, gnl\|Hg17\|chr1 (225094109-225094388)
	22-299, gnl\|Mm7\|chr19 (53441025-53441295)

	382-823, gnl\|bosTau2\|chr18 (15264523-15264087)
	382-823, gnl\|Hg17\|chr10 (112260786-112261236)