Non-Coding RNA Search

Ss1.1-Pig4-TMW8013L04.3

Sequence:


               
               GTGACTTGGGATTTTTAACCTTATATATCATTTTCCTTTATTCAAAACAAAACAATTTTT
AGCACACTGAGAAAAAAAAAAAAAAAAAAAGCCAAACATTTTGTGCCTTTCTAAGGCAGC
ACTGTATCCCAGGCTGCATTTTAGGACTTAATATGGAAATAGCAGAGTCTTAGCTCCTCT
ACCTTGAGTGTCATTCGTCCCTCCAGCCTAGGGGAGAGGAAATGCTCCCTGTGGCTGGGG
AGGTGGCACACAGGTGCAGCGTGTCAGCGGCCCCTCCTCCCTGCCATGATGCTTAGTTGG
AAGAAATGAGCATCGTGCCCTGGGATCCTTTGGTTGGTTCCAGTCAGAATCTTAGTTTTT
CAGGTTGAATGTTCTGTGTTCCATAAGATGAGACAGAATGTTCCATGATTTCCAGGTATA
CTCTGGACCATTTCAAGTATCCCGGACTCCTGATCCTATTAATGACCCAACTGCATGAAA
CACGTAGGGCGGACTCTCCTGAGAAGGGGAGGTTCTTTGTTTGTTTGTCTTGTCTTGTCT
TTTTGCTGGATCCTGAGCTGGCCTGGACTTCCTGCCTCTCACTTGGACTTGGCTTTCCTT
TCTTTTGAAAACTTCAGACATAGAGCATTAAGCAGCTGGTGCCCTCTGCAGGGGCTAGTT
TTCCCCTGGGAAAGGCAGCAGGGACCATATACCAGAACTGAGTACATGGTCCTCAGTATT
GTGGCCACTGTAGATTTTGACCAAAAAAAAAAAAAAGGAAAAAAAAGAAAAAAAAGTTTT
CTGTATAATGACGTTTTCTCTCTTTCCATTTTTTCAGTTCTTCCCTGCCTTTAACTAATA
AAGAAAGCATTGGGAGATAGAAACCATTCTTTTCAAAGTCCTCCTTATTAACAATTTTGA
CATTCTTGGCCTGGGTGGGGCTGGAGAGAACTTGATGCTTTCTCCAGAATGAAGAGTCCC
AATTTGTATATCAGTGTTAAAAATAAAACAAAATGAAAGATGAGATTTTTGTGGACTATT
TTAAAAAGGTGTCATTAATATAAAAAAATTTATATTAGCAGTATTTAATCATTCTCACCT
GTAAAGAATAAGAAAAACAGAAGGTAAATATTCTTACAGAGAATAGCAGAGCTTTAAGAT
TCATTTTCATTTTAAGTCCATTTTGTTTTGCCAATGTGTTAATGTTTAGAGGTTCTGTTA
TACTAATGTTATTTATTAATTTTTTTCATTTCCATACACAGTTAACTAAAGAGCTTTTTC
AGGCACCCATGTCTGTAAAAAATATTTTTAAATAAAGTTTCTTTTGTTGTAGCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACTTGGGATTTTTAACCTTATATATCATTTTCCTTTATTCAAAACAAAACAATTTTT
AGCACACTGAGAAAAAAAAAAAAAAAAAAAGCCAAACATTTTGTGCCTTTCTAAGGCAGC
ACTGTATCCCAGGCTGCATTTTAGGACTTAATATGGAAATAGCAGAGTCTTAGCTCCTCT
ACCTTGAGTGTCATTCGTCCCTCCAGCCTAGGGGAGAGGAAATGCTCCCTGTGGCTGGGG
AGGTGGCACACAGGTGCAGCGTGTCAGCGGCCCCTCCTCCCTGCCATGATGCTTAGTTGG
AAGAAATGAGCATCGTGCCCTGGGATCCTTTGGTTGGTTCCAGTCAGAATCTTAGTTTTT
CAGGTTGAATGTTCTGTGTTCCATAAGATGAGACAGAATGTTCCATGATTTCCAGGTATA
CTCTGGACCATTTCAAGTATCCCGGACTCCTGATCCTATTAATGACCCAACTGCATGAAA
CACGTAGGGCGGACTCTCCTGAGAAGGGGAGGTTCTTTGTTTGTTTGTCTTGTCTTGTCT
TTTTGCTGGATCCTGAGCTGGCCTGGACTTCCTGCCTCTCACTTGGACTTGGCTTTCCTT
TCTTTTGAAAACTTCAGACATAGAGCATTAAGCAGCTGGTGCCCTCTGCAGGGGCTAGTT
TTCCCCTGGGAAAGGCAGCAGGGACCATATACCAGAACTGAGTACATGGTCCTCAGTATT
GTGGCCACTGTAGATTTTGACCAAAAAAAAAAAAAAGGAAAAAAAAGAAAAAAAAGTTTT
CTGTATAATGACGTTTTCTCTCTTTCCATTTTTTCAGTTCTTCCCTGCCTTTAACTAATA
AAGAAAGCATTGGGAGATAGAAACCATTCTTTTCAAAGTCCTCCTTATTAACAATTTTGA
CATTCTTGGCCTGGGTGGGGCTGGAGAGAACTTGATGCTTTCTCCAGAATGAAGAGTCCC
AATTTGTATATCAGTGTTAAAAATAAAACAAAATGAAAGATGAGATTTTTGTGGACTATT
TTAAAAAGGTGTCATTAATATAAAAAAATTTATATTAGCAGTATTTAATCATTCTCACCT
GTAAAGAATAAGAAAAACAGAAGGTAAATATTCTTACAGAGAATAGCAGAGCTTTAAGAT
TCATTTTCATTTTAAGTCCATTTTGTTTTGCCAATGTGTTAATGTTTAGAGGTTCTGTTA
TACTAATGTTATTTATTAATTTTTTTCATTTCCATACACAGTTAACTAAAGAGCTTTTTC
AGGCACCCATGTCTGTAAAAAATATTTTTAAATAAAGTTTCTTTTGTTGTAGCAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               40-159, - strand, RNAz p=0.970499
               

               
               200-436, - strand, RNAz p=0.944562
               

               
               632-751, + strand, RNAz p=0.766591
               

               
               808-1002, + strand, RNAz p=0.999841

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.970499
               

               
               200-436, - strand, RNAz p=0.944562
               

               
               632-751, + strand, RNAz p=0.766591
               

               
               808-1002, + strand, RNAz p=0.999841

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               857-949, + strand, RNAmicro p=0.94202

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               857-949, + strand, RNAmicro p=0.94202

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_005188, +
               

               
               3' of NM_005188, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005188, +
               

               
               3' of NM_005188, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-751, gnl|bosTau2|chr15 (14389682-14390414)
               

               
               1-751, gnl|Hg17|chr11 (118682793-118683527)
               

               
               1-751, gnl|Mm7|chr9 (44078484-44077850)
               


               
               773-1314, gnl|bosTau2|chr15 (14390412-14390953)
               

               
               773-1314, gnl|Hg17|chr11 (118683525-118684067)
               

               
               773-1314, gnl|Mm7|chr9 (44077849-44077323)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-751, gnl|bosTau2|chr15 (14389682-14390414)
               

               
               1-751, gnl|Hg17|chr11 (118682793-118683527)
               

               
               1-751, gnl|Mm7|chr9 (44078484-44077850)
               


               
               773-1314, gnl|bosTau2|chr15 (14390412-14390953)
               

               
               773-1314, gnl|Hg17|chr11 (118683525-118684067)
               

               
               773-1314, gnl|Mm7|chr9 (44077849-44077323)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               cte (0.87822)
               

               
               thg (0.633955)
               

               
               sin (0.524843)
               

               
               fty (0.351679)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               thg (0.633955)
               

               
               sin (0.524843)
               

               
               fty (0.351679)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	40-159, - strand, RNAz p=0.970499
	200-436, - strand, RNAz p=0.944562
	632-751, + strand, RNAz p=0.766591
	808-1002, + strand, RNAz p=0.999841

	1-751, gnl\|bosTau2\|chr15 (14389682-14390414)
	1-751, gnl\|Hg17\|chr11 (118682793-118683527)
	1-751, gnl\|Mm7\|chr9 (44078484-44077850)

	773-1314, gnl\|bosTau2\|chr15 (14390412-14390953)
	773-1314, gnl\|Hg17\|chr11 (118683525-118684067)
	773-1314, gnl\|Mm7\|chr9 (44077849-44077323)

	cte (0.87822)
	thg (0.633955)
	sin (0.524843)
	fty (0.351679)
	fco (0.314416)
	fce (0.271592)
	ova (0.258264)
	sug (0.254582)
	mgp (0.230681)
	aor (0.195274)
	sto (0.179824)
	gul (0.177588)
	ill (0.175593)
	fhi (0.169578)
	mga (0.160205)
	cag (0.151194)
	ski (0.146735)
	csk (0.140746)
	kid (0.129735)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)
	spc (0.113366)
	eje (0.0988338)