Ss1.1-Pig4-TMW8013N19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGTCCCCTGCCGCTTGCCGTCTGCGCAGACATGGCGGCCACCTCGCTCCCTGCATGGC TGATCCTGAAGTCACGGGCCGGTACCTTTCGTGCCTTTTCTACGGCTATGTCTCCGGCAA CACGCTCTCCGAGACCAGCCCTGCGTACAACAGAAAGAACGTCCAAACCTGAAAGGGCAC TGAGAAGAAAGGCACTACCTCCTAGGACAGAGAAAATGGCTGTTGACCAAGACTGGCCTA GTGTTTACCCAGTTGCAGCACCGTTTAAACCTTCAGCGGTACCTCTTCCTGTCCGAATGG GTTATCCAGTAAAAAGAGGGGTGCCCATGGCTAAGGAGGGAAATCTTGAGCTTTTAAAGA TCCCCAATTTTCTGCATTTGACCCCTGTAGCAATTAAAAGGCACTGTGAAGCTCTTAAAG ATTTTTGTACTGAGTGGCCAGCTGCCTTAGACAGTGATGAGAAATGCGAGAAGCACTTTC CAATTGAAATTGATACAGCTGATTATGTTTCAGCAGGACCATCTATTCGAAACCCCAAAG CACGAGTAGTAACCTTAAGGGTTAAACTTTCCAGTTTGAATTTAGATGATCATGCAAAGA AGAAACTTATTAAACTTGTAGGAGATCGATACTGCAAGAGCACAGATGTGCTTACCATCA AAACAGACAGGTGCCCTTTAAAGAGACAGAATTATGATTATGCAGTATATCTACTAACAG TTTTATACCATGAGTCCTGGAAAACTGAAGAATGGGAAAAAAAGAAGACTGAAGCAGACA TGGAAGAGTATATTTGGGAAAACAGCACCTCAGAGAAAAACATCCTGGAAACACTTCTCC AAATTAAAGCTGCTGAGAAAAATCTAGAATTAAGTAAAGAAGAGCTCCTTGGTACTAAAG AAGTTGAAGATTACAGAAAGTCTGTTGTTAGTCTTAAGAATGAGGGGGACAATGAAAATA CCCTTTCTCAGTACAAAGAATCAGTGAAGAGACTATTAAATTTGGCGTGAACTGTGTAGG AAAATTGCCTTGATTTATTAATTTTATAATGTATATGTAATGATTATCTAATTTGCTATC AAGTTGAAAATGTTAAAAAACCATTGTCTTATTACGTCCGAGTTTAAAATTATTTCTTTC ATCCTAATGCACTATAGCAGTGATTATTCAGAAGTTTTCTTACTTATACACTGGGGCAAT CAGACTAATTAGATCTCTCTGCTTTCTTCTGGTTCTAAAGTATTTGGGTTTTATTTCTGC CATTAACAACCTTAGTATTCATACATATACAGTATCATTTTGTCACCTGCTACATTGTTC TCTCCACAAATTAGCACCCATTGGTTGCTTTTGTATGGTGATTTTGGTTGTACAGGAAGC GAGGCCCAGAACCCAGTGCCCTAAAGTTCAGTGTTTTGTTTATATAACTGCTATCTACCT AATGTGTTTTTTGCAGATGCTGATTTTGATTAGAAACAAGTCGTTGGCAGTATTTTCTAA CCTAAAAGGTTTGTTCCATCCCTCTATTTGGCTCGGGGTGGGGGGGGGTCACTTTTTGTT GACTCACTTCTGTTTAGCATCCAATTTCCCATATTCTTTTGCTCACTTCTCCAAGCCCAA ACTTGCAGAAAAGTGAAAATAGAGATTACCTGGTATTTGTCTTTTTGGATGCTCCAGCTA GAACTTCCACAGCCCGGAAAAGAGATGGCGTATAAGGGCCTTGAATTTAATTGGAGTAAA TGGCACAATGTTAACTTCCCTAAGAAACATTTCATTCAATTTAGCTGTTAATTCAGTATT TTTAAGTATCTCTATAAGTCATTTCTTACCACTTTGAAAGTTACCAATAAATGATTAATT TAAAATCAAAATAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGTCCCCTGCCGCTTGCCGTCTGCGCAGACATGGCGGCCACCTCGCTCCCTGCATGGC TGATCCTGAAGTCACGGGCCGGTACCTTTCGTGCCTTTTCTACGGCTATGTCTCCGGCAA CACGCTCTCCGAGACCAGCCCTGCGTACAACAGAAAGAACGTCCAAACCTGAAAGGGCAC TGAGAAGAAAGGCACTACCTCCTAGGACAGAGAAAATGGCTGTTGACCAAGACTGGCCTA GTGTTTACCCAGTTGCAGCACCGTTTAAACCTTCAGCGGTACCTCTTCCTGTCCGAATGG GTTATCCAGTAAAAAGAGGGGTGCCCATGGCTAAGGAGGGAAATCTTGAGCTTTTAAAGA TCCCCAATTTTCTGCATTTGACCCCTGTAGCAATTAAAAGGCACTGTGAAGCTCTTAAAG ATTTTTGTACTGAGTGGCCAGCTGCCTTAGACAGTGATGAGAAATGCGAGAAGCACTTTC CAATTGAAATTGATACAGCTGATTATGTTTCAGCAGGACCATCTATTCGAAACCCCAAAG CACGAGTAGTAACCTTAAGGGTTAAACTTTCCAGTTTGAATTTAGATGATCATGCAAAGA AGAAACTTATTAAACTTGTAGGAGATCGATACTGCAAGAGCACAGATGTGCTTACCATCA AAACAGACAGGTGCCCTTTAAAGAGACAGAATTATGATTATGCAGTATATCTACTAACAG TTTTATACCATGAGTCCTGGAAAACTGAAGAATGGGAAAAAAAGAAGACTGAAGCAGACA TGGAAGAGTATATTTGGGAAAACAGCACCTCAGAGAAAAACATCCTGGAAACACTTCTCC AAATTAAAGCTGCTGAGAAAAATCTAGAATTAAGTAAAGAAGAGCTCCTTGGTACTAAAG AAGTTGAAGATTACAGAAAGTCTGTTGTTAGTCTTAAGAATGAGGGGGACAATGAAAATA CCCTTTCTCAGTACAAAGAATCAGTGAAGAGACTATTAAATTTGGCGTGAACTGTGTAGG AAAATTGCCTTGATTTATTAATTTTATAATGTATATGTAATGATTATCTAATTTGCTATC AAGTTGAAAATGTTAAAAAACCATTGTCTTATTACGTCCGAGTTTAAAATTATTTCTTTC ATCCTAATGCACTATAGCAGTGATTATTCAGAAGTTTTCTTACTTATACACTGGGGCAAT CAGACTAATTAGATCTCTCTGCTTTCTTCTGGTTCTAAAGTATTTGGGTTTTATTTCTGC CATTAACAACCTTAGTATTCATACATATACAGTATCATTTTGTCACCTGCTACATTGTTC TCTCCACAAATTAGCACCCATTGGTTGCTTTTGTATGGTGATTTTGGTTGTACAGGAAGC GAGGCCCAGAACCCAGTGCCCTAAAGTTCAGTGTTTTGTTTATATAACTGCTATCTACCT AATGTGTTTTTTGCAGATGCTGATTTTGATTAGAAACAAGTCGTTGGCAGTATTTTCTAA CCTAAAAGGTTTGTTCCATCCCTCTATTTGGCTCGGGGTGGGGGGGGGTCACTTTTTGTT GACTCACTTCTGTTTAGCATCCAATTTCCCATATTCTTTTGCTCACTTCTCCAAGCCCAA ACTTGCAGAAAAGTGAAAATAGAGATTACCTGGTATTTGTCTTTTTGGATGCTCCAGCTA GAACTTCCACAGCCCGGAAAAGAGATGGCGTATAAGGGCCTTGAATTTAATTGGAGTAAA TGGCACAATGTTAACTTCCCTAAGAAACATTTCATTCAATTTAGCTGTTAATTCAGTATT TTTAAGTATCTCTATAAGTCATTTCTTACCACTTTGAAAGTTACCAATAAATGATTAATT TAAAATCAAAATAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 419-569, gnl|bosTau2|chr17 (24228132-24228282) | |
| 419-569, gnl|canFam2|chr27 (23023943-23023810) | |
| 419-569, gnl|canFam2|chr27 (23023913-23023776) | |
| 419-569, gnl|danRer3|chrNA (215009538-215009403) | |
| 419-569, gnl|dasNov1|scaffold_610 (62896-62766) | |
| 419-569, gnl|dasNov1|scaffold_610 (62869-62725) | |
| 419-569, gnl|echTel1|scaffold_168954 (4478-4601) | |
| 419-569, gnl|echTel1|scaffold_75766 (557-702) | |
| 419-569, gnl|fr1|chrUn (107586506-107586378) | |
| 419-569, gnl|galGal2|chr1 (186698473-186698348) | |
| 419-569, gnl|hg17|chr10 (59412240-59412382) | |
| 419-569, gnl|hg17|chr12 (27768218-27768350) | |
| 419-569, gnl|Hg17|chr12 (27768245-27768404) | |
| 419-569, gnl|loxAfr1|scaffold_38443 (6559-6704) | |
| 419-569, gnl|loxAfr1|scaffold_5691 (88293-88159) | |
| 419-569, gnl|mm7|chr6 (147134144-147134274) | |
| 419-569, gnl|mm7|chr6 (147134171-147134291) | |
| 419-569, gnl|Mm7|chr6 (147134169-147134319) | |
| 419-569, gnl|monDom2|scaffold_71 (8159476-8159353) | |
| 419-569, gnl|oryCun1|scaffold_175452 (3535-3674) | |
| 419-569, gnl|oryCun1|scaffold_211066 (20866-20734) | |
| 419-569, gnl|panTro1|chr8 (60238760-60238902) | |
| 419-569, gnl|panTro1|chrUn_random (54199722-54199854) | |
| 419-569, gnl|rheMac2|chr11 (28010323-28010455) | |
| 419-569, gnl|rheMac2|chr9 (79347106-79346964) | |
| 419-569, gnl|rn3|chr4 (184901614-184901744) | |
| 419-569, gnl|rn3|chr4 (184901641-184901785) | |
| 419-569, gnl|tetNig1|chr13 (8934811-8934939) | |
| 740-1289, gnl|bosTau2|chr5 (50452449-50452993) | |
| 740-1289, gnl|Hg17|chr12 (27799380-27799914) | |
| 1547-1874, gnl|bosTau2|chr14 (47516623-47516304) | |
| 1547-1874, gnl|Hg17|chr12 (27800167-27800483) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 419-569, gnl|bosTau2|chr17 (24228132-24228282) | |
| 419-569, gnl|canFam2|chr27 (23023943-23023810) | |
| 419-569, gnl|canFam2|chr27 (23023913-23023776) | |
| 419-569, gnl|danRer3|chrNA (215009538-215009403) | |
| 419-569, gnl|dasNov1|scaffold_610 (62896-62766) | |
| 419-569, gnl|dasNov1|scaffold_610 (62869-62725) | |
| 419-569, gnl|echTel1|scaffold_168954 (4478-4601) | |
| 419-569, gnl|echTel1|scaffold_75766 (557-702) | |
| 419-569, gnl|fr1|chrUn (107586506-107586378) | |
| 419-569, gnl|galGal2|chr1 (186698473-186698348) | |
| 419-569, gnl|hg17|chr10 (59412240-59412382) | |
| 419-569, gnl|hg17|chr12 (27768218-27768350) | |
| 419-569, gnl|Hg17|chr12 (27768245-27768404) | |
| 419-569, gnl|loxAfr1|scaffold_38443 (6559-6704) | |
| 419-569, gnl|loxAfr1|scaffold_5691 (88293-88159) | |
| 419-569, gnl|mm7|chr6 (147134144-147134274) | |
| 419-569, gnl|mm7|chr6 (147134171-147134291) | |
| 419-569, gnl|Mm7|chr6 (147134169-147134319) | |
| 419-569, gnl|monDom2|scaffold_71 (8159476-8159353) | |
| 419-569, gnl|oryCun1|scaffold_175452 (3535-3674) | |
| 419-569, gnl|oryCun1|scaffold_211066 (20866-20734) | |
| 419-569, gnl|panTro1|chr8 (60238760-60238902) | |
| 419-569, gnl|panTro1|chrUn_random (54199722-54199854) | |
| 419-569, gnl|rheMac2|chr11 (28010323-28010455) | |
| 419-569, gnl|rheMac2|chr9 (79347106-79346964) | |
| 419-569, gnl|rn3|chr4 (184901614-184901744) | |
| 419-569, gnl|rn3|chr4 (184901641-184901785) | |
| 419-569, gnl|tetNig1|chr13 (8934811-8934939) | |
| 740-1289, gnl|bosTau2|chr5 (50452449-50452993) | |
| 740-1289, gnl|Hg17|chr12 (27799380-27799914) | |
| 1547-1874, gnl|bosTau2|chr14 (47516623-47516304) | |
| 1547-1874, gnl|Hg17|chr12 (27800167-27800483) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| sme (0.610874) | |
| fco (0.471624) | |
| vin (0.332557) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| spc (0.113366) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| fco (0.471624) | |
| vin (0.332557) | |
| mgp (0.230681) | |
| mas (0.210305) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| spc (0.113366) |