Ss1.1-Pig4-TMW8013O14.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCAGGAGCTCGTCCCAGCCAGTCGGGTGGCCTTGGCCGGGGAGTATGGAGCAGTCCCT CACAGAAAATCCAGGAGCGGTCCCAAGCAGCTGGCCCCTCACCCCAACATCATCCGGGTC TTCCGTGCCTTCACCTCGTCTGTGCCGCTGTTGCCAGGGGCTCTGGTTGACTACCCCGAT GTGCTGCCCCCACGTCTTCACCCCGAAGGCCTGGGCCATGGGCGGACACTCTTCCTCGTC ATGAAGAACTACCCCTGTACGCTGCGCCAGTACCTTCGCGGGAACACCCCAAGCCCACGC CTCGCCACTGTGATGACGCTGCAGCTCCTGGAAGGGGTGGATCACCTGGTCCAGCAGGGC GTCGCTCACAGAGACCTGAAGTCTGACAACATCCTTGTGGAGCTGGATGCAGACGGCTGC CCCTGGTTGGTGATCGCAGACTTCGGCTGCTGCCTGGCCGATGAGCGCGTGGGCCTGCAG CTGCCTTTCACCAGCTGGTACGTGGACCGCGGCGGAAACGGCTGCCTGATGGCTCCTGAG GTGTCCACGGCCTGCCCTGGCCCCAGGGCGGTGATTGACTACAGCAAGGCTGACGCCTGG GCGGTGGGAGCGCTCGCCTACGAAATCTTCGGGCTCTCCAACCCCTTTTACGGCCAAGGC AGGGCCCACCTTGAAAGCCGCAGTTACCAAGAAGCTCAGCTTCCAGCGCTGCCCGAATCA GTGCCTCTAGACGTGAGACAGCTGGTGAGGTCGCTGCTCCAGCGAGATGCCAGCAAGAGG CCATCCGCCCGCGTGGCTGCTAACGTGCTTCATTTAAGCCTCTGGGGTGAAGATACTCTG GCCCTGAAGAACCTGAAACTAGACAAGATGGTCGGCTGGCTCCTCCAGCAGTCAGCTGCC ACTCTGTTGGCCAACAGGCTCACAGAGAAGAACTGCGTGGAGACAAAAATGAAGATGTTA TTTCTGGCCAACCTGGAGTATGAGGCGCTGAGCCAGGCAGCCCTCCTCCTCTACGCCTGG AGGGCAGCCCCGTGCCAGCTGATGTAGCTGGTGAATCACTAAAGGCACCTGCTGTATCTG TGTCGTGATGGTCTGTGAATGCTGCAGGAGGGGCTCCTGGGTGAGGGGGTGGGGAGTCAG GAGGAAAGACGGTGCGAGGGGGCCGGTCGGCCGAAGAGAAGGCTTCGGGTTTGGCAAGTG GAAGGATCAGCTTGAGTTCACGGTCTGTAGCTACTAACTGTAGTTGTGTGATTCTGATGC ATCATATAACCTGTGTGGACAGAGGCTCTCTTAGGAGAACCAAGAACCTGGCCTAGATAG GAGTTGGCACACTTTCTCTATAGAAGGCCAGTACTCAGGCTGTCGCAGGTACTCAACTGT CACCGTAGCACAAAAGCAACCTTACGTTGTCAACAAATCAGGATGACAGCCTTCCAACAA AGCTTTATGGACACTGCAATTTGGATTTCCAGTGTCATGAAATCTTTTCATTTTCAACCA CTTCAAAATATAAAAACCATTTTTAGATAGGCTGCTGCCTGTTTTCAGTAGGCCTGCAAG ACTGGCCCCCTAGTTTGCCAACCCCTCCTCTAGATGGAGTCAGAGGGTCTAACTCTTAAA AAGAAATGCTGATAATCACTAGGCCCCTTGGGTGTCAGCGCTGAAGAACGTGATTAGGTC TCTGCATACAGATCCAAAGGAGTGAGTCCTGGGCACCAGGAGAAAAGACAGCCAGTGTTG ACTGCTGACCAAAAGTCCCAGCTTCAGCTTGTGTCCTGTCTTCACAGACCTGCAGTTAGT AGCCCAGCTGGTCTGTGAGGTGAGCCGAGGGTCAGACCTGTGTCCCACATCAGAGGACCT GACCAGGGCAGTGGCTGGGTGGCCAAGTGTGACTGTGACGTTTGTCTCTAGCTCCAGGAC TACGGCTCATGTGACAGAGGCAACCGGGACATCAGTCTGCATGGTACCTGAGCTAAGGCA AACGTTTTCTCGGGTTGGGACATTCAGGTATCAGAATGGAAAACGCTTAATGAGGCCTGG GGTGGGGGCGGAGCCTCTGCCTTCTGGAACAGCTCTGGCTGTTTCTGAGGAAGCATTTCC AAGAAGCTCCTCCAGCTACTGAATGGAGTCTAGCAGAGCTAAAGGGACTGAGGAGATGGG AACCAACAGTGAGTGTTCTGAACGTGCTGATTTCCTCCTTTCGACTAGCGTTTCTTACAG GAGTCGTGGAGAATTAAATGCATACTTACCACTACAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCAGGAGCTCGTCCCAGCCAGTCGGGTGGCCTTGGCCGGGGAGTATGGAGCAGTCCCT CACAGAAAATCCAGGAGCGGTCCCAAGCAGCTGGCCCCTCACCCCAACATCATCCGGGTC TTCCGTGCCTTCACCTCGTCTGTGCCGCTGTTGCCAGGGGCTCTGGTTGACTACCCCGAT GTGCTGCCCCCACGTCTTCACCCCGAAGGCCTGGGCCATGGGCGGACACTCTTCCTCGTC ATGAAGAACTACCCCTGTACGCTGCGCCAGTACCTTCGCGGGAACACCCCAAGCCCACGC CTCGCCACTGTGATGACGCTGCAGCTCCTGGAAGGGGTGGATCACCTGGTCCAGCAGGGC GTCGCTCACAGAGACCTGAAGTCTGACAACATCCTTGTGGAGCTGGATGCAGACGGCTGC CCCTGGTTGGTGATCGCAGACTTCGGCTGCTGCCTGGCCGATGAGCGCGTGGGCCTGCAG CTGCCTTTCACCAGCTGGTACGTGGACCGCGGCGGAAACGGCTGCCTGATGGCTCCTGAG GTGTCCACGGCCTGCCCTGGCCCCAGGGCGGTGATTGACTACAGCAAGGCTGACGCCTGG GCGGTGGGAGCGCTCGCCTACGAAATCTTCGGGCTCTCCAACCCCTTTTACGGCCAAGGC AGGGCCCACCTTGAAAGCCGCAGTTACCAAGAAGCTCAGCTTCCAGCGCTGCCCGAATCA GTGCCTCTAGACGTGAGACAGCTGGTGAGGTCGCTGCTCCAGCGAGATGCCAGCAAGAGG CCATCCGCCCGCGTGGCTGCTAACGTGCTTCATTTAAGCCTCTGGGGTGAAGATACTCTG GCCCTGAAGAACCTGAAACTAGACAAGATGGTCGGCTGGCTCCTCCAGCAGTCAGCTGCC ACTCTGTTGGCCAACAGGCTCACAGAGAAGAACTGCGTGGAGACAAAAATGAAGATGTTA TTTCTGGCCAACCTGGAGTATGAGGCGCTGAGCCAGGCAGCCCTCCTCCTCTACGCCTGG AGGGCAGCCCCGTGCCAGCTGATGTAGCTGGTGAATCACTAAAGGCACCTGCTGTATCTG TGTCGTGATGGTCTGTGAATGCTGCAGGAGGGGCTCCTGGGTGAGGGGGTGGGGAGTCAG GAGGAAAGACGGTGCGAGGGGGCCGGTCGGCCGAAGAGAAGGCTTCGGGTTTGGCAAGTG GAAGGATCAGCTTGAGTTCACGGTCTGTAGCTACTAACTGTAGTTGTGTGATTCTGATGC ATCATATAACCTGTGTGGACAGAGGCTCTCTTAGGAGAACCAAGAACCTGGCCTAGATAG GAGTTGGCACACTTTCTCTATAGAAGGCCAGTACTCAGGCTGTCGCAGGTACTCAACTGT CACCGTAGCACAAAAGCAACCTTACGTTGTCAACAAATCAGGATGACAGCCTTCCAACAA AGCTTTATGGACACTGCAATTTGGATTTCCAGTGTCATGAAATCTTTTCATTTTCAACCA CTTCAAAATATAAAAACCATTTTTAGATAGGCTGCTGCCTGTTTTCAGTAGGCCTGCAAG ACTGGCCCCCTAGTTTGCCAACCCCTCCTCTAGATGGAGTCAGAGGGTCTAACTCTTAAA AAGAAATGCTGATAATCACTAGGCCCCTTGGGTGTCAGCGCTGAAGAACGTGATTAGGTC TCTGCATACAGATCCAAAGGAGTGAGTCCTGGGCACCAGGAGAAAAGACAGCCAGTGTTG ACTGCTGACCAAAAGTCCCAGCTTCAGCTTGTGTCCTGTCTTCACAGACCTGCAGTTAGT AGCCCAGCTGGTCTGTGAGGTGAGCCGAGGGTCAGACCTGTGTCCCACATCAGAGGACCT GACCAGGGCAGTGGCTGGGTGGCCAAGTGTGACTGTGACGTTTGTCTCTAGCTCCAGGAC TACGGCTCATGTGACAGAGGCAACCGGGACATCAGTCTGCATGGTACCTGAGCTAAGGCA AACGTTTTCTCGGGTTGGGACATTCAGGTATCAGAATGGAAAACGCTTAATGAGGCCTGG GGTGGGGGCGGAGCCTCTGCCTTCTGGAACAGCTCTGGCTGTTTCTGAGGAAGCATTTCC AAGAAGCTCCTCCAGCTACTGAATGGAGTCTAGCAGAGCTAAAGGGACTGAGGAGATGGG AACCAACAGTGAGTGTTCTGAACGTGCTGATTTCCTCCTTTCGACTAGCGTTTCTTACAG GAGTCGTGGAGAATTAAATGCATACTTACCACTACAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 815-974, - strand, RNAz p=0.926401 | |
| 1288-1402, + strand, RNAz p=0.733841 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 815-974, - strand, RNAz p=0.926401 | |
| 1288-1402, + strand, RNAz p=0.733841 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 62-248, gnl|bosTau2|chr17 (42011478-42011664) | |
| 62-248, gnl|canFam2|chr2 (81174509-81174296) | |
| 62-248, gnl|danRer3|chrUn (127046501-127046680) | |
| 62-248, gnl|dasNov1|scaffold_42897 (2643-2433) | |
| 62-248, gnl|echTel1|scaffold_225859 (3584-3789) | |
| 62-248, gnl|fr1|chrUn (283819139-283819314) | |
| 62-248, gnl|galGal2|chrUn (50449265-50449472) | |
| 62-248, gnl|hg17|chr1 (20716265-20716477) | |
| 62-248, gnl|Hg17|chr1 (20716286-20716471) | |
| 62-248, gnl|loxAfr1|scaffold_9316 (14468-14257) | |
| 62-248, gnl|mm7|chr4 (137696544-137696333) | |
| 62-248, gnl|Mm7|chr4 (137696522-137696337) | |
| 62-248, gnl|monDom2|scaffold_90 (2089329-2089542) | |
| 62-248, gnl|oryCun1|scaffold_133732 (842-1046) | |
| 62-248, gnl|panTro1|chr1_random (41543944-41544156) | |
| 62-248, gnl|rheMac2|chr1 (23310369-23310581) | |
| 62-248, gnl|rn3|chr5 (157106465-157106254) | |
| 62-248, gnl|tetNig1|chr9 (10234954-10234783) | |
| 249-422, gnl|bosTau2|chr17 (42012191-42012364) | |
| 249-422, gnl|canFam2|chr2 (81173840-81173666) | |
| 249-422, gnl|danRer3|chrUn (127048582-127048756) | |
| 249-422, gnl|dasNov1|scaffold_42897 (1921-1751) | |
| 249-422, gnl|echTel1|scaffold_225859 (4403-4577) | |
| 249-422, gnl|fr1|chrUn (283819475-283819648) | |
| 249-422, gnl|galGal2|chrUn (50450207-50450378) | |
| 249-422, gnl|hg17|chr1 (20717357-20717531) | |
| 249-422, gnl|Hg17|chr1 (20717359-20717532) | |
| 249-422, gnl|loxAfr1|scaffold_9316 (13699-13525) | |
| 249-422, gnl|mm7|chr4 (137695913-137695739) | |
| 249-422, gnl|Mm7|chr4 (137695909-137695736) | |
| 249-422, gnl|monDom2|scaffold_90 (2090657-2090829) | |
| 249-422, gnl|oryCun1|scaffold_133732 (1335-1506) | |
| 249-422, gnl|panTro1|chr1_random (41545038-41545212) | |
| 249-422, gnl|rheMac2|chr1 (23311461-23311635) | |
| 249-422, gnl|rn3|chr5 (157105840-157105666) | |
| 249-422, gnl|tetNig1|chr9 (10234699-10234527) | |
| 776-1701, gnl|bosTau2|chr17 (42017008-42017932) | |
| 1966-2259, gnl|bosTau2|chr17 (42018057-42018361) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-248, gnl|bosTau2|chr17 (42011478-42011664) | |
| 62-248, gnl|canFam2|chr2 (81174509-81174296) | |
| 62-248, gnl|danRer3|chrUn (127046501-127046680) | |
| 62-248, gnl|dasNov1|scaffold_42897 (2643-2433) | |
| 62-248, gnl|echTel1|scaffold_225859 (3584-3789) | |
| 62-248, gnl|fr1|chrUn (283819139-283819314) | |
| 62-248, gnl|galGal2|chrUn (50449265-50449472) | |
| 62-248, gnl|hg17|chr1 (20716265-20716477) | |
| 62-248, gnl|Hg17|chr1 (20716286-20716471) | |
| 62-248, gnl|loxAfr1|scaffold_9316 (14468-14257) | |
| 62-248, gnl|mm7|chr4 (137696544-137696333) | |
| 62-248, gnl|Mm7|chr4 (137696522-137696337) | |
| 62-248, gnl|monDom2|scaffold_90 (2089329-2089542) | |
| 62-248, gnl|oryCun1|scaffold_133732 (842-1046) | |
| 62-248, gnl|panTro1|chr1_random (41543944-41544156) | |
| 62-248, gnl|rheMac2|chr1 (23310369-23310581) | |
| 62-248, gnl|rn3|chr5 (157106465-157106254) | |
| 62-248, gnl|tetNig1|chr9 (10234954-10234783) | |
| 249-422, gnl|bosTau2|chr17 (42012191-42012364) | |
| 249-422, gnl|canFam2|chr2 (81173840-81173666) | |
| 249-422, gnl|danRer3|chrUn (127048582-127048756) | |
| 249-422, gnl|dasNov1|scaffold_42897 (1921-1751) | |
| 249-422, gnl|echTel1|scaffold_225859 (4403-4577) | |
| 249-422, gnl|fr1|chrUn (283819475-283819648) | |
| 249-422, gnl|galGal2|chrUn (50450207-50450378) | |
| 249-422, gnl|hg17|chr1 (20717357-20717531) | |
| 249-422, gnl|Hg17|chr1 (20717359-20717532) | |
| 249-422, gnl|loxAfr1|scaffold_9316 (13699-13525) | |
| 249-422, gnl|mm7|chr4 (137695913-137695739) | |
| 249-422, gnl|Mm7|chr4 (137695909-137695736) | |
| 249-422, gnl|monDom2|scaffold_90 (2090657-2090829) | |
| 249-422, gnl|oryCun1|scaffold_133732 (1335-1506) | |
| 249-422, gnl|panTro1|chr1_random (41545038-41545212) | |
| 249-422, gnl|rheMac2|chr1 (23311461-23311635) | |
| 249-422, gnl|rn3|chr5 (157105840-157105666) | |
| 249-422, gnl|tetNig1|chr9 (10234699-10234527) | |
| 776-1701, gnl|bosTau2|chr17 (42017008-42017932) | |
| 1966-2259, gnl|bosTau2|chr17 (42018057-42018361) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| ssp (1.49072) | |
| cov (0.792917) | |
| cki (0.660939) | |
| fcc (0.593354) | |
| cut (0.509771) | |
| fhi (0.508733) | |
| cje (0.495704) | |
| hea (0.408998) | |
| che (0.408942) | |
| ste (0.405625) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| lun (0.300978) | |
| fat (0.294855) | |
| ldo (0.291008) | |
| cst (0.280073) | |
| cly (0.241284) | |
| spc (0.226732) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ton (0.1755) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (1.49072) | |
| cov (0.792917) | |
| cki (0.660939) | |
| fcc (0.593354) | |
| cut (0.509771) | |
| fhi (0.508733) | |
| cje (0.495704) | |
| hea (0.408998) | |
| che (0.408942) | |
| ste (0.405625) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| lun (0.300978) | |
| fat (0.294855) | |
| ldo (0.291008) | |
| cst (0.280073) | |
| cly (0.241284) | |
| spc (0.226732) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ton (0.1755) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) |