Non-Coding RNA Search

Ss1.1-Pig4-TMW8013O20.3

Sequence:


               
               GCGCCTGCCCCAGTGAGGCTCCTGGGCCCTGTCCACCACGTATCTGTTCCCTTCTCCAAG
ATACATCTGCCTGAGCCACAGAGCCAAGTTATCCCAGCATCCCTGACCCTTTTGTGGAGC
TGGCAGAGGCTGGGTCAGAGGGGAGGCAGGGGGCCCCAGGCTTAGTCCTAGCAGGGAGCA
TTTCGGTCCCATTGTCCTCTGTGGCTCCCCCACCATCCTTGGCTTTTGGGGACCCGTGCT
GCCCTGGGTGCTCCAGACCATCTGGCCATCTGGGTTGTTACCTTTGTCCTCTGGAGGAGG
TGCCTCTGTCCCAAGTCCAAGGATCAGGAGGTGCAGCTGGAGACCGCAGGGCGTCAACAA
CATCCGCTGTCCTGCCCTGATCCCTGGCAGCCCACAGCAGATGGGTGGGGCAGGGGGCCC
CACAGGACTTTGCTCCAGCCCCCAGGGGCCCCAGGAACAGCATGGTGGCCCATCTCTAAG
GACCTAGTCCCCTGCCTCCCCTGGCACACAAGGATGGGAGGAGGTCCGGAGAGTCCCATG
GACCCCTGGGAAGCCTGACCAGCTGCTGGGCCTGAGAACCACCTAAAGAGCCCCTCTCCA
GCCCCCGTATCCTGGTCTCTCTTCACCTCCCTATGGGGGCTGGGGAGGGAACACCTGCAG
GGCAGAGCTCAGGCCAAGGTGCAGATTTCGGCTCCACCCCTTCCTGGGCTGTGTGGCCTT
GGCAGCTCATCAGACTTCTCTGGTCTTGCTCACCCATGTGGGCGGTGAGTGTCATGCCTT
ATCCTTCACTGCCTTCTCCTGAGATTGAAGCCTACATGTCTTTGTCAAGTGCCTGGCTCA
GAGCAGGTGGCTGCTAAATGCTTTTCCCCATCTCTCCCTGCCCGGCCTGGTGGAGATGAG
GGGTGAGAGGCAGGGAGCCAGGTGGGTAAGGGGGTACCACTGTGCTGTAGGGTGGCCTAG
GTCTGCATCCCGCTCTCACTAATTCTGTGCTCTTGGGCAAGATATTAACCTCTCTGTGCC
TTAGTTTTCTCACCTGTAAAAAGAGGATGAGTAGTGGAATTTTATATATATAGATACACA
CGTCCTAGTGTCATAAGGATTAAATGAGTTTATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCTGCCCCAGTGAGGCTCCTGGGCCCTGTCCACCACGTATCTGTTCCCTTCTCCAAG
ATACATCTGCCTGAGCCACAGAGCCAAGTTATCCCAGCATCCCTGACCCTTTTGTGGAGC
TGGCAGAGGCTGGGTCAGAGGGGAGGCAGGGGGCCCCAGGCTTAGTCCTAGCAGGGAGCA
TTTCGGTCCCATTGTCCTCTGTGGCTCCCCCACCATCCTTGGCTTTTGGGGACCCGTGCT
GCCCTGGGTGCTCCAGACCATCTGGCCATCTGGGTTGTTACCTTTGTCCTCTGGAGGAGG
TGCCTCTGTCCCAAGTCCAAGGATCAGGAGGTGCAGCTGGAGACCGCAGGGCGTCAACAA
CATCCGCTGTCCTGCCCTGATCCCTGGCAGCCCACAGCAGATGGGTGGGGCAGGGGGCCC
CACAGGACTTTGCTCCAGCCCCCAGGGGCCCCAGGAACAGCATGGTGGCCCATCTCTAAG
GACCTAGTCCCCTGCCTCCCCTGGCACACAAGGATGGGAGGAGGTCCGGAGAGTCCCATG
GACCCCTGGGAAGCCTGACCAGCTGCTGGGCCTGAGAACCACCTAAAGAGCCCCTCTCCA
GCCCCCGTATCCTGGTCTCTCTTCACCTCCCTATGGGGGCTGGGGAGGGAACACCTGCAG
GGCAGAGCTCAGGCCAAGGTGCAGATTTCGGCTCCACCCCTTCCTGGGCTGTGTGGCCTT
GGCAGCTCATCAGACTTCTCTGGTCTTGCTCACCCATGTGGGCGGTGAGTGTCATGCCTT
ATCCTTCACTGCCTTCTCCTGAGATTGAAGCCTACATGTCTTTGTCAAGTGCCTGGCTCA
GAGCAGGTGGCTGCTAAATGCTTTTCCCCATCTCTCCCTGCCCGGCCTGGTGGAGATGAG
GGGTGAGAGGCAGGGAGCCAGGTGGGTAAGGGGGTACCACTGTGCTGTAGGGTGGCCTAG
GTCTGCATCCCGCTCTCACTAATTCTGTGCTCTTGGGCAAGATATTAACCTCTCTGTGCC
TTAGTTTTCTCACCTGTAAAAAGAGGATGAGTAGTGGAATTTTATATATATAGATACACA
CGTCCTAGTGTCATAAGGATTAAATGAGTTTATCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               524-699, - strand, RNAz p=0.997575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               524-699, - strand, RNAz p=0.997575

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               690-814, + strand, RNAmicro p=0.999984

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               690-814, + strand, RNAmicro p=0.999984

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               524-699, DB818082 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818082.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               524-699, DB818082 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818082.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1115, gnl|bosTau2|chr13 (33846121-33847277)
               

               
               1-1115, gnl|Hg17|chr20 (3794782-3795968)
               

               
               1-1115, gnl|Mm7|chr2 (130987627-130988871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1115, gnl|bosTau2|chr13 (33846121-33847277)
               

               
               1-1115, gnl|Hg17|chr20 (3794782-3795968)
               

               
               1-1115, gnl|Mm7|chr2 (130987627-130988871)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ute (0.398353)
               

               
               clu (0.239292)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.398353)
               

               
               clu (0.239292)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)

	1-1115, gnl\|bosTau2\|chr13 (33846121-33847277)
	1-1115, gnl\|Hg17\|chr20 (3794782-3795968)
	1-1115, gnl\|Mm7\|chr2 (130987627-130988871)

	ute (0.398353)
	clu (0.239292)
	mas (0.210305)
	col (0.195008)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	nje (0.16592)