Non-Coding RNA Search

Ss1.1-Pig4-TMW8014A04.5

Sequence:


               
               AGGCCTTTGGAGCAGCAGGGCTGAGCAACGACTTCCCACTGGCTCAGTTCTTTGCTGGGG
CCCGAGCCCTGCGCTTTGCTGATGGCCCTGATGAGGTGCACCGGGCGGCAGTGGCCAAGA
TGGAGCTGAAGCATGGCCTATAGATGTGCAAGGACCTCAGGAGCCGGAATGTCCCTGCTG
GGCCAGGGTGCCTACATTTTAAGTGGTGCAGTTTGAAAGGCCTGGTATGTGTGACTCTTG
CACCCTGCCCAGCAGTCTGTCCTGTGGCTATCATTGTGAACTTAGCCTTGTTGGGTCCCC
ACAGAAGAGACTTCTGTGAGAGGCCTGGCATTCCCTGTTTCAGGCACGGAGGAAGAGGAT
TAGCTGAGAGCTGAGTGGGTTTTGGTACAGAGCCTGGAAAGTTGGTCTTCAGTCCAGGAC
CCCGTCTCTCTGGCTGTGTTGCATACAGGCTCTGAGAGTCTGGACAGATAGCAGGGGTGC
TGCTGGGGTGCTGTGTCCATCCGTGCTTACTCCCAATGTGGGGGCCTCCTCCTCCCTGCC
TCCCCATTTCCCACCCCAGCTGATGGCAGCAGCCTACAGACCCAAGGCAGGAGCACTCTT
GGGAAAAAGGAATGAAACCAAAATCATGAAACTACTGCCATCTGATTTTCTTCTTCTGAG
TGTCCAAAACACAGAACACTGAGATGTTACTTCGGAAATGGACTTTTGGGGAACAAGAAA
ATATACCTCAGATATCATGAATGTTCTATGTCATACAAAATGAATGGAGAATAAAGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCTTTGGAGCAGCAGGGCTGAGCAACGACTTCCCACTGGCTCAGTTCTTTGCTGGGG
CCCGAGCCCTGCGCTTTGCTGATGGCCCTGATGAGGTGCACCGGGCGGCAGTGGCCAAGA
TGGAGCTGAAGCATGGCCTATAGATGTGCAAGGACCTCAGGAGCCGGAATGTCCCTGCTG
GGCCAGGGTGCCTACATTTTAAGTGGTGCAGTTTGAAAGGCCTGGTATGTGTGACTCTTG
CACCCTGCCCAGCAGTCTGTCCTGTGGCTATCATTGTGAACTTAGCCTTGTTGGGTCCCC
ACAGAAGAGACTTCTGTGAGAGGCCTGGCATTCCCTGTTTCAGGCACGGAGGAAGAGGAT
TAGCTGAGAGCTGAGTGGGTTTTGGTACAGAGCCTGGAAAGTTGGTCTTCAGTCCAGGAC
CCCGTCTCTCTGGCTGTGTTGCATACAGGCTCTGAGAGTCTGGACAGATAGCAGGGGTGC
TGCTGGGGTGCTGTGTCCATCCGTGCTTACTCCCAATGTGGGGGCCTCCTCCTCCCTGCC
TCCCCATTTCCCACCCCAGCTGATGGCAGCAGCCTACAGACCCAAGGCAGGAGCACTCTT
GGGAAAAAGGAATGAAACCAAAATCATGAAACTACTGCCATCTGATTTTCTTCTTCTGAG
TGTCCAAAACACAGAACACTGAGATGTTACTTCGGAAATGGACTTTTGGGGAACAAGAAA
ATATACCTCAGATATCATGAATGTTCTATGTCATACAAAATGAATGGAGAATAAAGGCTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-133, gnl|bosTau2|chr17 (30948518-30948386)
               

               
               1-133, gnl|Hg17|chr12 (110656855-110656987)
               

               
               1-133, gnl|Mm7|chr5 (120855643-120855511)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-133, gnl|bosTau2|chr17 (30948518-30948386)
               

               
               1-133, gnl|Hg17|chr12 (110656855-110656987)
               

               
               1-133, gnl|Mm7|chr5 (120855643-120855511)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)

	1-133, gnl\|bosTau2\|chr17 (30948518-30948386)
	1-133, gnl\|Hg17\|chr12 (110656855-110656987)
	1-133, gnl\|Mm7\|chr5 (120855643-120855511)