Ss1.1-Pig4-TMW8014A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAACACCGAACCCATAAAAGCTAAAGAGGAGCTGATCTTCCACTGTGGATTCAGGCGCT TCCGAGCCTCACCTTTATTCTCTCAGCACACTGCAGCGGATAAACATAAATTTCAGAGAT TCTTGACTGCTGACATGGCCCTGGTGGTGACAGTATATGCCCCAATCACCTTTCCTCCTG CATCTGTGCTGCTTTTCAAACAGAACAGCAATGGAATGCACAGTCTCATTGCCACAGGCC ATCTATTGTCAGTGGATCCAGACAGAATGGTCATCAAGAGAGTTGTTCTGAGTGGTCATC CTTTTAAAATTTTTACTAAGATGGCCGTGGTGCGTTACATGTTCTTCAGCAGAGAGGATG TGCTGTGGTTTAAACCAGTGGAACTGAGAACAAAGTGGGGACGTAGGGGACACATCAAGG AGCCTTTAGGTACTCATGGCCACATGAAGTGCAGTTTTGATGGGAAGCTAAAATCTCAGG ACACAGTACTGATGAACCTCTATAAACGAGTTTTCCCCAAATGGACTTATGATCCATATG TACCGGATCCAGTACCTTGGGTGAAAAATGAGATCTCTTCAACAGTACCTGAAGAGGACA TGGAATAATGGATTCTGTGGGCTTCTGTCTTGTTGCTGCCAGTTAGCACTCTGGGGGTGG GAGCCCGTAGGTTGTGACTGGACAGTTTGTTTTCTGCATAGGCTTAGGGGTCTCTACTCC TCTTTGCAGAAGACTTTCTTAGCCTTAACAAGGTGTCTCAGTTAAGTATCGATGTTTTTC TATCCCTACTTAGTCTGAAAACTATTAAATCTTACTGAAATGTCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAACACCGAACCCATAAAAGCTAAAGAGGAGCTGATCTTCCACTGTGGATTCAGGCGCT TCCGAGCCTCACCTTTATTCTCTCAGCACACTGCAGCGGATAAACATAAATTTCAGAGAT TCTTGACTGCTGACATGGCCCTGGTGGTGACAGTATATGCCCCAATCACCTTTCCTCCTG CATCTGTGCTGCTTTTCAAACAGAACAGCAATGGAATGCACAGTCTCATTGCCACAGGCC ATCTATTGTCAGTGGATCCAGACAGAATGGTCATCAAGAGAGTTGTTCTGAGTGGTCATC CTTTTAAAATTTTTACTAAGATGGCCGTGGTGCGTTACATGTTCTTCAGCAGAGAGGATG TGCTGTGGTTTAAACCAGTGGAACTGAGAACAAAGTGGGGACGTAGGGGACACATCAAGG AGCCTTTAGGTACTCATGGCCACATGAAGTGCAGTTTTGATGGGAAGCTAAAATCTCAGG ACACAGTACTGATGAACCTCTATAAACGAGTTTTCCCCAAATGGACTTATGATCCATATG TACCGGATCCAGTACCTTGGGTGAAAAATGAGATCTCTTCAACAGTACCTGAAGAGGACA TGGAATAATGGATTCTGTGGGCTTCTGTCTTGTTGCTGCCAGTTAGCACTCTGGGGGTGG GAGCCCGTAGGTTGTGACTGGACAGTTTGTTTTCTGCATAGGCTTAGGGGTCTCTACTCC TCTTTGCAGAAGACTTTCTTAGCCTTAACAAGGTGTCTCAGTTAAGTATCGATGTTTTTC TATCCCTACTTAGTCTGAAAACTATTAAATCTTACTGAAATGTCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 213-331, + strand, RNAz p=0.518189 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 213-331, + strand, RNAz p=0.518189 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 213-354, gnl|bosTau2|chr19 (17833925-17833784) | |
| 213-354, gnl|canFam2|chr12 (19861101-19860960) | |
| 213-354, gnl|canFam2|chr9 (49747199-49747329) | |
| 213-354, gnl|danRer3|chrUn (18541112-18540982) | |
| 213-354, gnl|danRer3|chrUn (18541112-18540882) | |
| 213-354, gnl|dasNov1|scaffold_21857 (6144-6014) | |
| 213-354, gnl|dasNov1|scaffold_21857 (6144-6003) | |
| 213-354, gnl|echTel1|scaffold_270259 (4440-4310) | |
| 213-354, gnl|echTel1|scaffold_270259 (4440-4301) | |
| 213-354, gnl|fr1|chrUn (60150672-60150542) | |
| 213-354, gnl|fr1|chrUn (60150672-60150439) | |
| 213-354, gnl|galGal2|chr19 (5276258-5276388) | |
| 213-354, gnl|galGal2|chr19 (5276147-5276398) | |
| 213-354, gnl|hg17|chr17 (2174734-2174864) | |
| 213-354, gnl|Hg17|chr17 (2174874-2174733) | |
| 213-354, gnl|hg17|chr5 (56649823-56649964) | |
| 213-354, gnl|mm7|chr11 (74989539-74989409) | |
| 213-354, gnl|mm7|chr11 (74989539-74989398) | |
| 213-354, gnl|Mm7|chr11 (74989397-74989538) | |
| 213-354, gnl|monDom2|scaffold_86 (3462334-3462464) | |
| 213-354, gnl|monDom2|scaffold_86 (3462335-3462473) | |
| 213-354, gnl|oryCun1|scaffold_138602 (6335-6465) | |
| 213-354, gnl|oryCun1|scaffold_138602 (6335-6470) | |
| 213-354, gnl|panTro1|chr19 (2352858-2352988) | |
| 213-354, gnl|panTro1|chr4 (59497025-59496884) | |
| 213-354, gnl|rheMac2|chr16 (2116999-2117129) | |
| 213-354, gnl|rheMac2|chr6 (54985100-54985234) | |
| 213-354, gnl|rn3|chr10 (62231163-62231033) | |
| 213-354, gnl|rn3|chr10 (62231163-62231024) | |
| 213-354, gnl|tetNig1|chr16 (3254221-3254091) | |
| 213-354, gnl|tetNig1|chr16 (3254221-3253991) | |
| 213-354, gnl|xenTro1|scaffold_50 (1799206-1799064) | |
| 427-821, gnl|bosTau2|chr19 (17833479-17833082) | |
| 427-821, gnl|Hg17|chr17 (2174421-2174025) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 213-354, gnl|bosTau2|chr19 (17833925-17833784) | |
| 213-354, gnl|canFam2|chr12 (19861101-19860960) | |
| 213-354, gnl|canFam2|chr9 (49747199-49747329) | |
| 213-354, gnl|danRer3|chrUn (18541112-18540982) | |
| 213-354, gnl|danRer3|chrUn (18541112-18540882) | |
| 213-354, gnl|dasNov1|scaffold_21857 (6144-6014) | |
| 213-354, gnl|dasNov1|scaffold_21857 (6144-6003) | |
| 213-354, gnl|echTel1|scaffold_270259 (4440-4310) | |
| 213-354, gnl|echTel1|scaffold_270259 (4440-4301) | |
| 213-354, gnl|fr1|chrUn (60150672-60150542) | |
| 213-354, gnl|fr1|chrUn (60150672-60150439) | |
| 213-354, gnl|galGal2|chr19 (5276258-5276388) | |
| 213-354, gnl|galGal2|chr19 (5276147-5276398) | |
| 213-354, gnl|hg17|chr17 (2174734-2174864) | |
| 213-354, gnl|Hg17|chr17 (2174874-2174733) | |
| 213-354, gnl|hg17|chr5 (56649823-56649964) | |
| 213-354, gnl|mm7|chr11 (74989539-74989409) | |
| 213-354, gnl|mm7|chr11 (74989539-74989398) | |
| 213-354, gnl|Mm7|chr11 (74989397-74989538) | |
| 213-354, gnl|monDom2|scaffold_86 (3462334-3462464) | |
| 213-354, gnl|monDom2|scaffold_86 (3462335-3462473) | |
| 213-354, gnl|oryCun1|scaffold_138602 (6335-6465) | |
| 213-354, gnl|oryCun1|scaffold_138602 (6335-6470) | |
| 213-354, gnl|panTro1|chr19 (2352858-2352988) | |
| 213-354, gnl|panTro1|chr4 (59497025-59496884) | |
| 213-354, gnl|rheMac2|chr16 (2116999-2117129) | |
| 213-354, gnl|rheMac2|chr6 (54985100-54985234) | |
| 213-354, gnl|rn3|chr10 (62231163-62231033) | |
| 213-354, gnl|rn3|chr10 (62231163-62231024) | |
| 213-354, gnl|tetNig1|chr16 (3254221-3254091) | |
| 213-354, gnl|tetNig1|chr16 (3254221-3253991) | |
| 213-354, gnl|xenTro1|scaffold_50 (1799206-1799064) | |
| 427-821, gnl|bosTau2|chr19 (17833479-17833082) | |
| 427-821, gnl|Hg17|chr17 (2174421-2174025) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| csp (0.161186) | |
| pla (0.133672) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| pla (0.133672) | |
| cty (0.10408) | |
| ldo (0.0970026) |