Ss1.1-Pig4-TMW8014A15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCGTTTCATGTACTGTACGCCCTTCACGCTAGACGGCCGCGCCCACGGGGAGCTTCAT GAACAATTCAAACGGAAGACCATTCTGACCACTTCTCATGCCTTTCCCTATATTAAGACC AGAGTCAATGTCACTCACAAAGAGGAGATCATCTTAACACCAATTGAAGTTGCTATTGAA GACATGCAGAAAAAAACGCAGGAGTTGGCATTTGCAACACATCAGGATCCAGCAGACCCC AAAATGCTGCAGATGGTACTCCAGGGATCTGTAGGCACAACAGTGAATCAGGGGCCTTTG GAAGTTGCCCAGGTTTTCTTATCTGAAATACCCAGTGACCCAAAACTCTTCAGACATCAT AATAAACTGCGACTCTGCTTTAAAGATTTTACTAAAAGGTGTGAGGATGCCTTAAGAAAA AATAAGAGCTTAATTGGGCCAGATCAAAAGGAGTATCAACGGGAACTGGAGAGAAACTAC CATCGCCTTAAAGAGGCCCTACAGCCTTTGATAAACAGAAAGATCCCACAGTTATACAAG GCGGTATTACCTGTTACCTGCCACAGAGATTCCTTCAGTCGAATGAGCCTGCGCAAAATG GATCTCTAATATAAAGGCACTTGTTTTACTCATTTGATAAAAGCCATGTATTCATCATGG AGTTTAAGAACTTAAGATCTATTGAAAACGACTTGGGACCTCATTCTGGAAATAAGAGCA TTAATTTACTAATTGAACAATACAGTGGCCAAAACAATATCAAATGGAGCTCATTGAAGT TTGAGAATCATGGCTATGGTTTCTTAATGTTCTGGTAACATGGTGTTATCTTTTTTTTTT TTTTTTAAAAGACATTTTAATGACTCAAAGGTACACTTACATTTACCATTATTTATACCA TAGCTGATGTGAAATTTATTTACTTTTAAGTTTGTATTTCTTAATTTATATTACCATTTA TAGATTCATTTTGGAACCATTTAAAATGTAGTAATGCTTATTTTAAAGGTACTATTAAAT ATGTGAACGTTTACACTAATTTTACTGAGTTGAGACTTTAAACATTTTTCTTTATTGACA AAAGCAGAGAATAAGTTAGAGTTGATTGAAGAAATAGTTCCAAAACTAGCAAAGTGAAAA TTGTAATTGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCGTTTCATGTACTGTACGCCCTTCACGCTAGACGGCCGCGCCCACGGGGAGCTTCAT GAACAATTCAAACGGAAGACCATTCTGACCACTTCTCATGCCTTTCCCTATATTAAGACC AGAGTCAATGTCACTCACAAAGAGGAGATCATCTTAACACCAATTGAAGTTGCTATTGAA GACATGCAGAAAAAAACGCAGGAGTTGGCATTTGCAACACATCAGGATCCAGCAGACCCC AAAATGCTGCAGATGGTACTCCAGGGATCTGTAGGCACAACAGTGAATCAGGGGCCTTTG GAAGTTGCCCAGGTTTTCTTATCTGAAATACCCAGTGACCCAAAACTCTTCAGACATCAT AATAAACTGCGACTCTGCTTTAAAGATTTTACTAAAAGGTGTGAGGATGCCTTAAGAAAA AATAAGAGCTTAATTGGGCCAGATCAAAAGGAGTATCAACGGGAACTGGAGAGAAACTAC CATCGCCTTAAAGAGGCCCTACAGCCTTTGATAAACAGAAAGATCCCACAGTTATACAAG GCGGTATTACCTGTTACCTGCCACAGAGATTCCTTCAGTCGAATGAGCCTGCGCAAAATG GATCTCTAATATAAAGGCACTTGTTTTACTCATTTGATAAAAGCCATGTATTCATCATGG AGTTTAAGAACTTAAGATCTATTGAAAACGACTTGGGACCTCATTCTGGAAATAAGAGCA TTAATTTACTAATTGAACAATACAGTGGCCAAAACAATATCAAATGGAGCTCATTGAAGT TTGAGAATCATGGCTATGGTTTCTTAATGTTCTGGTAACATGGTGTTATCTTTTTTTTTT TTTTTTAAAAGACATTTTAATGACTCAAAGGTACACTTACATTTACCATTATTTATACCA TAGCTGATGTGAAATTTATTTACTTTTAAGTTTGTATTTCTTAATTTATATTACCATTTA TAGATTCATTTTGGAACCATTTAAAATGTAGTAATGCTTATTTTAAAGGTACTATTAAAT ATGTGAACGTTTACACTAATTTTACTGAGTTGAGACTTTAAACATTTTTCTTTATTGACA AAAGCAGAGAATAAGTTAGAGTTGATTGAAGAAATAGTTCCAAAACTAGCAAAGTGAAAA TTGTAATTGACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 146-292, gnl|bosTau2|chr3 (56759680-56759534) | |
| 146-292, gnl|canFam2|chr5 (50640786-50640634) | |
| 146-292, gnl|danRer3|chr6 (16754371-16754221) | |
| 146-292, gnl|echTel1|scaffold_315600 (48283-48131) | |
| 146-292, gnl|fr1|chrUn (95761911-95761761) | |
| 146-292, gnl|galGal2|chr8 (27727778-27727930) | |
| 146-292, gnl|hg17|chr1 (62652895-62653047) | |
| 146-292, gnl|Hg17|chr1 (62653045-62652899) | |
| 146-292, gnl|loxAfr1|scaffold_668 (95548-95700) | |
| 146-292, gnl|mm7|chr4 (98337242-98337394) | |
| 146-292, gnl|Mm7|chr4 (98337392-98337246) | |
| 146-292, gnl|monDom2|scaffold_40 (12281134-12280986) | |
| 146-292, gnl|oryCun1|scaffold_211801 (18264-18112) | |
| 146-292, gnl|panTro1|chr1 (60983840-60983992) | |
| 146-292, gnl|rheMac2|chr1 (65286554-65286706) | |
| 146-292, gnl|rn3|chr5 (119390937-119391089) | |
| 146-292, gnl|tetNig1|chr1 (16034180-16034030) | |
| 146-292, gnl|xenTro1|scaffold_1 (2674452-2674300) | |
| 425-1039, gnl|bosTau2|chr16 (5198382-5198984) | |
| 425-1039, gnl|Hg17|chr1 (62635371-62632703) | |
| 425-1039, gnl|Mm7|chr4 (98333642-98329462) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-292, gnl|bosTau2|chr3 (56759680-56759534) | |
| 146-292, gnl|canFam2|chr5 (50640786-50640634) | |
| 146-292, gnl|danRer3|chr6 (16754371-16754221) | |
| 146-292, gnl|echTel1|scaffold_315600 (48283-48131) | |
| 146-292, gnl|fr1|chrUn (95761911-95761761) | |
| 146-292, gnl|galGal2|chr8 (27727778-27727930) | |
| 146-292, gnl|hg17|chr1 (62652895-62653047) | |
| 146-292, gnl|Hg17|chr1 (62653045-62652899) | |
| 146-292, gnl|loxAfr1|scaffold_668 (95548-95700) | |
| 146-292, gnl|mm7|chr4 (98337242-98337394) | |
| 146-292, gnl|Mm7|chr4 (98337392-98337246) | |
| 146-292, gnl|monDom2|scaffold_40 (12281134-12280986) | |
| 146-292, gnl|oryCun1|scaffold_211801 (18264-18112) | |
| 146-292, gnl|panTro1|chr1 (60983840-60983992) | |
| 146-292, gnl|rheMac2|chr1 (65286554-65286706) | |
| 146-292, gnl|rn3|chr5 (119390937-119391089) | |
| 146-292, gnl|tetNig1|chr1 (16034180-16034030) | |
| 146-292, gnl|xenTro1|scaffold_1 (2674452-2674300) | |
| 425-1039, gnl|bosTau2|chr16 (5198382-5198984) | |
| 425-1039, gnl|Hg17|chr1 (62635371-62632703) | |
| 425-1039, gnl|Mm7|chr4 (98333642-98329462) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| tra (0.246184) | |
| ill (0.175593) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.246184) | |
| ill (0.175593) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| jej (0.0989218) |