Non-Coding RNA Search

Ss1.1-Pig4-TMW8014A17.3

Sequence:


               
               CTTGAATGTGCTTCACAAGCCAGGCTATCTTCCAAGGAAGGCTGAAGGGGATGGGGTAGG
GGGATGAGGGGAGCAGAGGGACACATGCAGACAAGCACCTGGAAGAGAGACCCTGGGAGG
GCTCCCTTTCCCTCACCCTAAGCAGAAAAGAAGCAGAAGTCCGCTCAGCCCCGTCCTGAG
CACAGACACTACACAAAGGAGACGCTGTATGTTAAGCAATACTTTAATACTGTAATATGT
TTGTTTTCTTTTTCTTTCTTTTTTTTTTTTTCTTAACCAAAAAAAAAAAAAAAAAAGTAA
GCAAACTAAAACAAAGATATATAAACACAACCCACCCCTCTGGGGAAGCAACTGTAATCC
AAACACTGGGCTATCAAATCCACAGAATGTATTGTCACAGACGAGAGTTCATTTCCAGGA
GGCAGGGGCGTGCGGGGGAGGGGGATGGGGACTGAGAGACAGAAGTTCCAGAGCCTTCCC
GAAGGCTCTCTGCTCCTGTATTCTGTACATACTGTACCATCCTGTGTGGCATCTGTGAGT
GTCCTCTCGAGTAGCGTGGGCTAGCCAATCTGCCGTTCATGGTGTATCGTAAACTCGGAA
TTCCATATGTAATAGGATGCAAGTCGAAGCGTTTCATGTGGACATAAATGTATCTAAATA
AAACTTTCCCTAGCACTGTGGCTGACCTCACCCTTACTTTTATACTTTAGTATGAAACTG
ATGACAACTTTGGTAGTGAGTATTTTTTTTATATATATACATATATATGTATCTATATAT
ATATATATCTCAAGCATCTTTCAGGTCTTTGTGTGTGGCTTTCTTAAAGCCCTGTTGTAA
AAAAATTACTATGTGGATGGCAGTCTCTCACATCCCAGATGTGGAAAGTATAATTTTATA
TTTGTATTTTCAAATAAATAAGTTTGTGAAAGGTTTCCATCCTCTACTGTGGTCCAGAAA
TCAATGTGTTTGTCTGACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAATGTGCTTCACAAGCCAGGCTATCTTCCAAGGAAGGCTGAAGGGGATGGGGTAGG
GGGATGAGGGGAGCAGAGGGACACATGCAGACAAGCACCTGGAAGAGAGACCCTGGGAGG
GCTCCCTTTCCCTCACCCTAAGCAGAAAAGAAGCAGAAGTCCGCTCAGCCCCGTCCTGAG
CACAGACACTACACAAAGGAGACGCTGTATGTTAAGCAATACTTTAATACTGTAATATGT
TTGTTTTCTTTTTCTTTCTTTTTTTTTTTTTCTTAACCAAAAAAAAAAAAAAAAAAGTAA
GCAAACTAAAACAAAGATATATAAACACAACCCACCCCTCTGGGGAAGCAACTGTAATCC
AAACACTGGGCTATCAAATCCACAGAATGTATTGTCACAGACGAGAGTTCATTTCCAGGA
GGCAGGGGCGTGCGGGGGAGGGGGATGGGGACTGAGAGACAGAAGTTCCAGAGCCTTCCC
GAAGGCTCTCTGCTCCTGTATTCTGTACATACTGTACCATCCTGTGTGGCATCTGTGAGT
GTCCTCTCGAGTAGCGTGGGCTAGCCAATCTGCCGTTCATGGTGTATCGTAAACTCGGAA
TTCCATATGTAATAGGATGCAAGTCGAAGCGTTTCATGTGGACATAAATGTATCTAAATA
AAACTTTCCCTAGCACTGTGGCTGACCTCACCCTTACTTTTATACTTTAGTATGAAACTG
ATGACAACTTTGGTAGTGAGTATTTTTTTTATATATATACATATATATGTATCTATATAT
ATATATATCTCAAGCATCTTTCAGGTCTTTGTGTGTGGCTTTCTTAAAGCCCTGTTGTAA
AAAAATTACTATGTGGATGGCAGTCTCTCACATCCCAGATGTGGAAAGTATAATTTTATA
TTTGTATTTTCAAATAAATAAGTTTGTGAAAGGTTTCCATCCTCTACTGTGGTCCAGAAA
TCAATGTGTTTGTCTGACAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-174, - strand, RNAz p=0.957173
               

               
               252-348, - strand, RNAz p=0.994138
               

               
               851-983, - strand, RNAz p=0.899592

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-174, - strand, RNAz p=0.957173
               

               
               252-348, - strand, RNAz p=0.994138
               

               
               851-983, - strand, RNAz p=0.899592

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-983, gnl|bosTau2|chr19 (3931945-3930970)
               

               
               1-983, gnl|Hg17|chr17 (53116051-53117021)
               

               
               1-983, gnl|Mm7|chr11 (88410322-88409319)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-983, gnl|bosTau2|chr19 (3931945-3930970)
               

               
               1-983, gnl|Hg17|chr17 (53116051-53117021)
               

               
               1-983, gnl|Mm7|chr11 (88410322-88409319)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cmu (0.55918)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-174, - strand, RNAz p=0.957173
	252-348, - strand, RNAz p=0.994138
	851-983, - strand, RNAz p=0.899592

	1-983, gnl\|bosTau2\|chr19 (3931945-3930970)
	1-983, gnl\|Hg17\|chr17 (53116051-53117021)
	1-983, gnl\|Mm7\|chr11 (88410322-88409319)

	cmu (0.55918)
	gul (0.355177)
	fhi (0.339155)
	spl (0.286369)
	hea (0.204499)
	ldo (0.194005)
	mgm (0.180343)
	eye (0.170503)
	bfe (0.149858)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	sug (0.127291)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)