Non-Coding RNA Search

Ss1.1-Pig4-TMW8014E13.3

Sequence:


               
               GCAATACCTTCTGTTGAGGTTTCCTCCGGGGAGGCAGCCGCCTGTCAGCATGGCTCAAGC
ATTTGTGAACAGCAAAATCCAGCCTGGGAAGGTGGTAGTTTTCATCAAGCCCACCTGCCC
CTTCTGCAGAAAGACACAGGAGCTCCTCAGCCAATTGCCCTTCAAAGAAGGGCTTCTGGA
ATTTGTCGATATTACAGCCACCAGTGACACCAACGAGATTCAAGATTATCTGCAACAGCT
CACAGGAGCCAGAACGGTACCTCGGGTCTTTATCGGTAAAGAGTGTATAGGTGGATGCAC
TGATCTAGAAAGTATGCACAAGAGAGGGGAGCTCTTGACCCGCCTGCAGCAAATTGGAGC
TCTGAAATAATTACAGCAGAGCAGACCCAAGCTGATAGCTCCCTTGAGAGCTGGATGGCA
GTGCAGATAATGACAGCGCTTCCTGGTGGATGGATGCCGGGCTACCTTCACTCAGCTGCA
ACTACTGTTTACTTAAAATTCTGAAATGTGTTAACCCAAATAATTGGGGGGAGTGGGTTT
TGGGGGACAAAACCAGATTTTTCTTCTGACTCTGTATTAAAAGTGGATCAACTTGCCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAATACCTTCTGTTGAGGTTTCCTCCGGGGAGGCAGCCGCCTGTCAGCATGGCTCAAGC
ATTTGTGAACAGCAAAATCCAGCCTGGGAAGGTGGTAGTTTTCATCAAGCCCACCTGCCC
CTTCTGCAGAAAGACACAGGAGCTCCTCAGCCAATTGCCCTTCAAAGAAGGGCTTCTGGA
ATTTGTCGATATTACAGCCACCAGTGACACCAACGAGATTCAAGATTATCTGCAACAGCT
CACAGGAGCCAGAACGGTACCTCGGGTCTTTATCGGTAAAGAGTGTATAGGTGGATGCAC
TGATCTAGAAAGTATGCACAAGAGAGGGGAGCTCTTGACCCGCCTGCAGCAAATTGGAGC
TCTGAAATAATTACAGCAGAGCAGACCCAAGCTGATAGCTCCCTTGAGAGCTGGATGGCA
GTGCAGATAATGACAGCGCTTCCTGGTGGATGGATGCCGGGCTACCTTCACTCAGCTGCA
ACTACTGTTTACTTAAAATTCTGAAATGTGTTAACCCAAATAATTGGGGGGAGTGGGTTT
TGGGGGACAAAACCAGATTTTTCTTCTGACTCTGTATTAAAAGTGGATCAACTTGCCCGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523548|ref|NP_999398.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523548|ref|NP_999398.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-529, gnl|bosTau2|chr18 (51194674-51194194)
               

               
               46-529, gnl|Hg17|chr20 (35665003-35664560)
               

               
               46-529, gnl|Mm7|chrX (138901536-138901083)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-529, gnl|bosTau2|chr18 (51194674-51194194)
               

               
               46-529, gnl|Hg17|chr20 (35665003-35664560)
               

               
               46-529, gnl|Mm7|chrX (138901536-138901083)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               duo (3.28322)
               

               
               cje (0.991408)
               

               
               csp (0.483559)
               

               
               pla (0.401016)
               

               
               cly (0.361925)
               

               
               nje (0.33184)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (3.28322)
               

               
               cje (0.991408)
               

               
               csp (0.483559)
               

               
               pla (0.401016)
               

               
               cly (0.361925)
               

               
               nje (0.33184)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	46-529, gnl\|bosTau2\|chr18 (51194674-51194194)
	46-529, gnl\|Hg17\|chr20 (35665003-35664560)
	46-529, gnl\|Mm7\|chrX (138901536-138901083)

	duo (3.28322)
	cje (0.991408)
	csp (0.483559)
	pla (0.401016)
	cly (0.361925)
	nje (0.33184)
	cst (0.280073)
	cga (0.279096)
	cbl (0.229595)
	mas (0.210305)
	cty (0.20816)
	col (0.195008)
	sto (0.179824)
	fty (0.17584)
	cli (0.152812)
	lnt (0.142308)
	nca (0.136874)
	ssp (0.13552)
	lyg (0.133103)
	ute (0.132784)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)