Non-Coding RNA Search

Ss1.1-Pig4-TMW8014G09.3

Sequence:


               
               ATACATATCTGTGTTTCCCACAGAAACCTAGGACTGTGGGAAACTTGGGAACTGATTAAA
TTTTAAAGGTTTGTTTTGTTCATTGTTTTGATACTAATGCTAGGAAAAGGGATCTAGAAC
ATCTTGAAGTCAGAATACAAATATTATTCCCTTGGGTTTGGGAGAATTTAAGCAGTCTCT
GCAATCCTTCACATGGTGAGAATATAAGCCTTCTGTAGTCCCACTAAACTTTCAGTGACT
TTGCTGCCTCCCCCAATTTCTCATGTTGCTGCTTGTTAACACCCAGCTTGTAACTGAGTG
TTTGTTCCTGGTGGTTTAAAAAGGGTTCATGTTGTATCAAACTGTCAATTTCTATCTTCT
TATCCCTCTGCGGATGTGAACTTAAAACAAGCATGGTACTGTAACCCTGCCTGTTGGAGT
GGTCTGGAAGGAGAATCCTTTTTTAAGTGGGAGACCTTTCCATTTTATTGTGTCTAAAGT
TTTTAGTATGAACTTGGCGTTGGAAAAGGGACGGGAGCAGGGCGAAAAGAATGTTTCCTA
AAAGCCAGTGTCTACTCTTCCCCTTTATGAGTGTGTATTCATAGTGGATGAAAAGAAGAG
AGAGACTTGGGTTTGTTGCCATGTTCAGCATGAAGAGGGATGCTTGACAGCATGGTAGCT
GGAGCCAGAGCACACATGTCTCCATCAGGAACACGGCTGTTGAAAGCTGAGGGCTTAACT
GATGAGTGGGTGATCACAATTGGAATTGGTTACAAGGTGGAAGTGCTGGCTGGGTTAAGT
ACCCCAAGAAAAGAATGCAGCAGACTAACAGTGTTAACCTACATTCTGGTTTTGAACTGA
TCTCCTCACCCTGCTCCATACACCTAAAATTGTCTGTTTTCTTATCTGACCAAAGAGCAA
AGAAGGAAAAAAGTAAAACACTTTACCAATCTATGTCACTCAGGTACAATTTTGTGGTAA
TATTGTTATCTGTTTTTTCTTTGTATTGCCCTTAAGAGTCCTTTCTCGGCGTATTATCCT
GCTCTTGCCTCTGTCCCCCTTGGGGCACCTCGGTTCTGGATGCTACCCCTGGGATCTCTA
CTGCTGTTATGTGAATGATAAGATGTAAGTGACCATTATAGTAAGGGCTCTTTGTAAAAA
ATTAAAATTTTTTTTAAAAATTTTAAAAAAGGATGTTGTATACATTTTATAGTCTGGCTG
TCAGTTTGATATCTTGCTGTCAAGTATGTTTCTCGATCTGTATTTATCCATCCCATCAAT
AAATGTTAATGATAAAACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACATATCTGTGTTTCCCACAGAAACCTAGGACTGTGGGAAACTTGGGAACTGATTAAA
TTTTAAAGGTTTGTTTTGTTCATTGTTTTGATACTAATGCTAGGAAAAGGGATCTAGAAC
ATCTTGAAGTCAGAATACAAATATTATTCCCTTGGGTTTGGGAGAATTTAAGCAGTCTCT
GCAATCCTTCACATGGTGAGAATATAAGCCTTCTGTAGTCCCACTAAACTTTCAGTGACT
TTGCTGCCTCCCCCAATTTCTCATGTTGCTGCTTGTTAACACCCAGCTTGTAACTGAGTG
TTTGTTCCTGGTGGTTTAAAAAGGGTTCATGTTGTATCAAACTGTCAATTTCTATCTTCT
TATCCCTCTGCGGATGTGAACTTAAAACAAGCATGGTACTGTAACCCTGCCTGTTGGAGT
GGTCTGGAAGGAGAATCCTTTTTTAAGTGGGAGACCTTTCCATTTTATTGTGTCTAAAGT
TTTTAGTATGAACTTGGCGTTGGAAAAGGGACGGGAGCAGGGCGAAAAGAATGTTTCCTA
AAAGCCAGTGTCTACTCTTCCCCTTTATGAGTGTGTATTCATAGTGGATGAAAAGAAGAG
AGAGACTTGGGTTTGTTGCCATGTTCAGCATGAAGAGGGATGCTTGACAGCATGGTAGCT
GGAGCCAGAGCACACATGTCTCCATCAGGAACACGGCTGTTGAAAGCTGAGGGCTTAACT
GATGAGTGGGTGATCACAATTGGAATTGGTTACAAGGTGGAAGTGCTGGCTGGGTTAAGT
ACCCCAAGAAAAGAATGCAGCAGACTAACAGTGTTAACCTACATTCTGGTTTTGAACTGA
TCTCCTCACCCTGCTCCATACACCTAAAATTGTCTGTTTTCTTATCTGACCAAAGAGCAA
AGAAGGAAAAAAGTAAAACACTTTACCAATCTATGTCACTCAGGTACAATTTTGTGGTAA
TATTGTTATCTGTTTTTTCTTTGTATTGCCCTTAAGAGTCCTTTCTCGGCGTATTATCCT
GCTCTTGCCTCTGTCCCCCTTGGGGCACCTCGGTTCTGGATGCTACCCCTGGGATCTCTA
CTGCTGTTATGTGAATGATAAGATGTAAGTGACCATTATAGTAAGGGCTCTTTGTAAAAA
ATTAAAATTTTTTTTAAAAATTTTAAAAAAGGATGTTGTATACATTTTATAGTCTGGCTG
TCAGTTTGATATCTTGCTGTCAAGTATGTTTCTCGATCTGTATTTATCCATCCCATCAAT
AAATGTTAATGATAAAACAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-109, + strand, RNAz p=0.993664
               

               
               564-677, + strand, RNAz p=0.781925

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-109, + strand, RNAz p=0.993664
               

               
               564-677, + strand, RNAz p=0.781925

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-479, gnl|bosTau2|chr5 (26431757-26432229)
               

               
               3-479, gnl|Hg17|chr12 (47369765-47369306)
               

               
               3-479, gnl|Mm7|chr15 (98525955-98525522)
               


               
               525-847, gnl|bosTau2|chr1 (51977039-51977372)
               

               
               525-847, gnl|Hg17|chr12 (47369265-47368928)
               

               
               525-847, gnl|Mm7|chr15 (98525486-98525053)
               


               
               935-1174, gnl|bosTau2|chr1 (51977373-51977615)
               

               
               935-1174, gnl|Hg17|chr12 (47368840-47368610)
               

               
               935-1174, gnl|Mm7|chr15 (98525052-98524835)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-479, gnl|bosTau2|chr5 (26431757-26432229)
               

               
               3-479, gnl|Hg17|chr12 (47369765-47369306)
               

               
               3-479, gnl|Mm7|chr15 (98525955-98525522)
               


               
               525-847, gnl|bosTau2|chr1 (51977039-51977372)
               

               
               525-847, gnl|Hg17|chr12 (47369265-47368928)
               

               
               525-847, gnl|Mm7|chr15 (98525486-98525053)
               


               
               935-1174, gnl|bosTau2|chr1 (51977373-51977615)
               

               
               935-1174, gnl|Hg17|chr12 (47368840-47368610)
               

               
               935-1174, gnl|Mm7|chr15 (98525052-98524835)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               thg (0.507164)
               

               
               cut (0.339847)
               

               
               spl (0.286369)
               

               
               spc (0.226732)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ret (0.128733)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               cut (0.339847)
               

               
               spl (0.286369)
               

               
               spc (0.226732)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ret (0.128733)

	3-109, + strand, RNAz p=0.993664
	564-677, + strand, RNAz p=0.781925

	3-479, gnl\|bosTau2\|chr5 (26431757-26432229)
	3-479, gnl\|Hg17\|chr12 (47369765-47369306)
	3-479, gnl\|Mm7\|chr15 (98525955-98525522)

	525-847, gnl\|bosTau2\|chr1 (51977039-51977372)
	525-847, gnl\|Hg17\|chr12 (47369265-47368928)
	525-847, gnl\|Mm7\|chr15 (98525486-98525053)

	935-1174, gnl\|bosTau2\|chr1 (51977373-51977615)
	935-1174, gnl\|Hg17\|chr12 (47368840-47368610)
	935-1174, gnl\|Mm7\|chr15 (98525052-98524835)

	thg (0.507164)
	cut (0.339847)
	spl (0.286369)
	spc (0.226732)
	ldo (0.194005)
	nlu (0.191681)
	gul (0.177588)
	ill (0.175593)
	liv (0.146284)
	csk (0.140746)
	ste (0.135208)
	ret (0.128733)