Non-Coding RNA Search

Ss1.1-Pig4-TMW8014H08.3

Sequence:


               
               GCACTACCACCTGTGCAGTGCCCCCATGGCCGTGCTGCAGGATGTGTTACCTAAGTATAT
CCTGGACTTCTCCCTGTTTGCCTACCCACTGCCTAATGTCACCAGGGAGGCCTGTCATCA
GTAACCATGGGTGTGGGCCAGGAGCTGCTGGGGACTGGTTTTGACAATGCCAGTTTCTGT
GTTACCATCTGCCATACAAAGAAACCCTGGCTCTGGGGCCTGGGGCTTCTCCAGATGGAA
AAGACTGCCTTTGGATGTTCCTTGTCCAGGGTGGGTGCCCACAGTGGCTCAGAGGACAGG
GTTGGACAGGTGATCTGGTGCTCTCCAAAGGGGAGGTTTCTTGGGGGGCCAGTGTGATCC
TTCTTGCCCTGGCAGAGCCAGATTCCAGTTTGCCAGTGAAGCAACACATCTGTCCTAAAG
ATTGGCGGCAGGGCCCTGCTTGCCTGGATTGTGCAGTCCACTTAGTCCACCTTATTTTAA
ACCTGTGGCCAAACTCAGGAGGTCTACCAGAGCTGGGATCCCTGTGGCCCATTCATCACT
TCCATGCGCCTCAGGGCTGGAGTCCGAAGTCGTGCCTTATGAATGACTTTTGTATCTTTC
TACTTCAGACTTAGAATTTCCTACACTTGCCAGATTCTTTTCATTTTTCCAAGGAAAGGA
AAACTGAAAGGGCCCTTGCCTGGTAGCACCAGGATCTGGCCCTGCAGCATCCAAAGATCC
CTGTGTGGCTAGTGTATCTTGCTGCCACTTTTTTAGTGCATTTATTTAAAATTTGTATTT
TTTGATAGAACCTTTGAGAAGGCTTTGTTTTCCCAATAGCTGAATTTTTAATAAAGCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTACCACCTGTGCAGTGCCCCCATGGCCGTGCTGCAGGATGTGTTACCTAAGTATAT
CCTGGACTTCTCCCTGTTTGCCTACCCACTGCCTAATGTCACCAGGGAGGCCTGTCATCA
GTAACCATGGGTGTGGGCCAGGAGCTGCTGGGGACTGGTTTTGACAATGCCAGTTTCTGT
GTTACCATCTGCCATACAAAGAAACCCTGGCTCTGGGGCCTGGGGCTTCTCCAGATGGAA
AAGACTGCCTTTGGATGTTCCTTGTCCAGGGTGGGTGCCCACAGTGGCTCAGAGGACAGG
GTTGGACAGGTGATCTGGTGCTCTCCAAAGGGGAGGTTTCTTGGGGGGCCAGTGTGATCC
TTCTTGCCCTGGCAGAGCCAGATTCCAGTTTGCCAGTGAAGCAACACATCTGTCCTAAAG
ATTGGCGGCAGGGCCCTGCTTGCCTGGATTGTGCAGTCCACTTAGTCCACCTTATTTTAA
ACCTGTGGCCAAACTCAGGAGGTCTACCAGAGCTGGGATCCCTGTGGCCCATTCATCACT
TCCATGCGCCTCAGGGCTGGAGTCCGAAGTCGTGCCTTATGAATGACTTTTGTATCTTTC
TACTTCAGACTTAGAATTTCCTACACTTGCCAGATTCTTTTCATTTTTCCAAGGAAAGGA
AAACTGAAAGGGCCCTTGCCTGGTAGCACCAGGATCTGGCCCTGCAGCATCCAAAGATCC
CTGTGTGGCTAGTGTATCTTGCTGCCACTTTTTTAGTGCATTTATTTAAAATTTGTATTT
TTTGATAGAACCTTTGAGAAGGCTTTGTTTTCCCAATAGCTGAATTTTTAATAAAGCCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-307, + strand, RNAz p=0.62828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-307, + strand, RNAz p=0.62828

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_130468, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_130468, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-725, gnl|bosTau2|chr10 (27081709-27082454)
               

               
               1-725, gnl|Hg17|chr15 (38551712-38552443)
               

               
               1-725, gnl|Mm7|chr2 (118668508-118669242)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-725, gnl|bosTau2|chr10 (27081709-27082454)
               

               
               1-725, gnl|Hg17|chr15 (38551712-38552443)
               

               
               1-725, gnl|Mm7|chr2 (118668508-118669242)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	1-725, gnl\|bosTau2\|chr10 (27081709-27082454)
	1-725, gnl\|Hg17\|chr15 (38551712-38552443)
	1-725, gnl\|Mm7\|chr2 (118668508-118669242)