Non-Coding RNA Search

Ss1.1-Pig4-TMW8014H14.5

Sequence:


               
               GGCACTCCTTTTTTTTTTTCCCCTTGGTATTTTTTAATATAGTTTAGTGAAAGATTTCTA
AAGTAAAGTATTGGATGAAAAATGAAAAAAAATATTTTCAGGTTTTAGATAACTATAGAA
TGGAAGAATTTGGGTTTGGTTTGTTTTCCTGCTTACATATTTTCTAACATTGCTCTTTCT
TCTACTCTTATCCCTAAGGTAAAAAGAAGATTCAGTTGCAAAGGGAGAAAATGAAGGCCA
AACAGAAGCAGGATCTAGCGTCTGCAAAAACTTGGATTCAAAATGATCCTGAACAGAAAA
TGAAGTTAACTTCAGAACACACTTTCTGCCTTGAAAACTGAAAAAAGCTATTACTTCCTT
TTTTCACATGACCACAAATCCTTTGATGGAAATGTACAGCAGAAACTCTTGAGAGAGAAG
CTAAAAGCAACTCTATTTTACCCCCCCCCCAGACTTTTCTTATGAAAAGTCAATAATTAA
GCAAATTGCTTAACACTTGGTTCCAGTTCCTGCGTATCTGGAGTTTAACGTCATAATACA
CCATTAATTTCCATGCTGCAGTCTTTATTTTAAAGAAAGTAACAGGATGTCCTTACACTG
ACAATGAAAATTCATCAGTTTTAGAGCCAGGAATTTCCCGTGTTACACAAGAAAAAAAAT
AGAAGTCTACTGAATTAATTTTTTAGAAGAAGAGAGATCAGATTAAATATTTCTTTGTTT
TTCCTTTTGGAAACTTTTATGTATAATTCTTTCTGCCTGCCTACTTTTCTGCAAAATGAG
ATGTACAGATTTCAGTTCCCTGCTATGAAAAGTGATGTGGTGGCAATTTTATAAATGTTG
CTTTCTGATTTTTATCAGAGTGAGAAAATAATTAAAATTATTATTGATTTCATATCACTC
CATATTTTGATTTCCCCTCCATTTTAGTTTAATATAATTTTCAATAAATGTACATATTGT
TGTTTGTTTCATAAAGCATATCACTTTAAAAATAGTTTTTACTCCTGTGATTATGTTGGA
ATATTTGGAATCTTAAAGGAGTAAAGACTGTCCAGCATTTGGTTTCATAATGTTTGTCAC
CAGATTTTTATTATTGATGTAAAAAAGTCAATTTTTTTAAATAGTTGGACTTTTGGCAGC
TTTGTAAGGAAAGTGGGAAGTGTTTAGGATTGCTATCAATTTTCAGCATTGTGCTGTTGG
GAAATAAGTGTTTCGCTTTTGTCTGCCAGTCTGGGCTCCATTTTTATGTTTATTTTAGAA
GATAACTGTTGCATCAGTATATTATTTCTTGGCATTGTTCAGCATAGGTAACGTGTGCAC
TTTTTGTGTACACATATTCATATTTAAGTTTTTGCATAAAATAAATGCTTCTAGATGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACTCCTTTTTTTTTTTCCCCTTGGTATTTTTTAATATAGTTTAGTGAAAGATTTCTA
AAGTAAAGTATTGGATGAAAAATGAAAAAAAATATTTTCAGGTTTTAGATAACTATAGAA
TGGAAGAATTTGGGTTTGGTTTGTTTTCCTGCTTACATATTTTCTAACATTGCTCTTTCT
TCTACTCTTATCCCTAAGGTAAAAAGAAGATTCAGTTGCAAAGGGAGAAAATGAAGGCCA
AACAGAAGCAGGATCTAGCGTCTGCAAAAACTTGGATTCAAAATGATCCTGAACAGAAAA
TGAAGTTAACTTCAGAACACACTTTCTGCCTTGAAAACTGAAAAAAGCTATTACTTCCTT
TTTTCACATGACCACAAATCCTTTGATGGAAATGTACAGCAGAAACTCTTGAGAGAGAAG
CTAAAAGCAACTCTATTTTACCCCCCCCCCAGACTTTTCTTATGAAAAGTCAATAATTAA
GCAAATTGCTTAACACTTGGTTCCAGTTCCTGCGTATCTGGAGTTTAACGTCATAATACA
CCATTAATTTCCATGCTGCAGTCTTTATTTTAAAGAAAGTAACAGGATGTCCTTACACTG
ACAATGAAAATTCATCAGTTTTAGAGCCAGGAATTTCCCGTGTTACACAAGAAAAAAAAT
AGAAGTCTACTGAATTAATTTTTTAGAAGAAGAGAGATCAGATTAAATATTTCTTTGTTT
TTCCTTTTGGAAACTTTTATGTATAATTCTTTCTGCCTGCCTACTTTTCTGCAAAATGAG
ATGTACAGATTTCAGTTCCCTGCTATGAAAAGTGATGTGGTGGCAATTTTATAAATGTTG
CTTTCTGATTTTTATCAGAGTGAGAAAATAATTAAAATTATTATTGATTTCATATCACTC
CATATTTTGATTTCCCCTCCATTTTAGTTTAATATAATTTTCAATAAATGTACATATTGT
TGTTTGTTTCATAAAGCATATCACTTTAAAAATAGTTTTTACTCCTGTGATTATGTTGGA
ATATTTGGAATCTTAAAGGAGTAAAGACTGTCCAGCATTTGGTTTCATAATGTTTGTCAC
CAGATTTTTATTATTGATGTAAAAAAGTCAATTTTTTTAAATAGTTGGACTTTTGGCAGC
TTTGTAAGGAAAGTGGGAAGTGTTTAGGATTGCTATCAATTTTCAGCATTGTGCTGTTGG
GAAATAAGTGTTTCGCTTTTGTCTGCCAGTCTGGGCTCCATTTTTATGTTTATTTTAGAA
GATAACTGTTGCATCAGTATATTATTTCTTGGCATTGTTCAGCATAGGTAACGTGTGCAC
TTTTTGTGTACACATATTCATATTTAAGTTTTTGCATAAAATAAATGCTTCTAGATGTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               951-1347, gnl|bosTau2|chr1 (16373765-16374158)
               

               
               951-1347, gnl|Hg17|chr4 (39648873-39648525)
               

               
               951-1347, gnl|Mm7|chr13 (23192456-23192061)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               951-1347, gnl|bosTau2|chr1 (16373765-16374158)
               

               
               951-1347, gnl|Hg17|chr4 (39648873-39648525)
               

               
               951-1347, gnl|Mm7|chr13 (23192456-23192061)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               clu (0.239292)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)

	951-1347, gnl\|bosTau2\|chr1 (16373765-16374158)
	951-1347, gnl\|Hg17\|chr4 (39648873-39648525)
	951-1347, gnl\|Mm7\|chr13 (23192456-23192061)

	clu (0.239292)
	aor (0.195274)
	col (0.195008)
	fbs (0.175346)
	bfe (0.149858)
	liv (0.146284)
	lnt (0.142308)
	lyg (0.133103)
	ese (0.126502)