Non-Coding RNA Search

Ss1.1-Pig4-TMW8014K11.3

Sequence:


               
               AAAAAAGTTTTTGATTATATGCTTCTTGCAGTTACTCTCTTGTTATTTAAACAAAAAAGT
TTCAGGTCTATCTTTGGAGTATTTATAACTTCTGATTTTTGAAATGACTGAATTAGGAAC
TAGAATGCTTACTCTTTCGGTTTACCTAAAAACCAGTCCACAATCTGATTGTCTCTTGGG
AAAGGGAGGTGCCTTGCAAAAAACACTTTCATATTAAGAATGTGCCTGAGGCTGCTTTAC
TCTGGAATAGTCTCAGATCTAAAATCTCCTTTACATAACGTGGCATATGTAAGTTTTGCT
TCACCAGAACTGTTTAGAATGCTATTTCAAATGTTGCCATTCTCTTAGATTTGCTAATTA
TGTACCCACCTCTGATTTGACTCCTCCTGAAATGATAGGATCTGTCGTTCCAAAGGTGAT
AAACTTGAAATTACCGGAATCCGTGTTTTACTTGAAATTCTGCAGAATACCCAGATGGAG
TGAAAAATAATAGAAAGGGTTTTGTGCAATGACTAAAAAGGTAAAACACTGTTAAGTTTC
AAGAATAAATACTTTCAACCCAAATACTTTCAACCTCTGCTTGACTATATATTATGGAAT
AGTAACCTTTTAGGATTTTCAAAATTGGCATCTAAAACTTTCAAGGGAGGTGGCTCCCAG
ATGGTACCATTTGCTCTTTCCTAGCTAACCCTAGATATGGCAGCTCTTTAATGTACTTCA
AAAAGCAGATATATATTACTAAGGAAAAAAATTATTTATAATTGCCTTGTCATAATTGTT
AAGGTGTTCTAGAGCCATTTGCATACAATTTAATGTAATTTCATTCCATTCTATTGTTTA
CACACCGATTACTCGAAGATGACTGCAAAGGTAAAAGGAAAATAAAAGTGTATTATTGCA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAGTTTTTGATTATATGCTTCTTGCAGTTACTCTCTTGTTATTTAAACAAAAAAGT
TTCAGGTCTATCTTTGGAGTATTTATAACTTCTGATTTTTGAAATGACTGAATTAGGAAC
TAGAATGCTTACTCTTTCGGTTTACCTAAAAACCAGTCCACAATCTGATTGTCTCTTGGG
AAAGGGAGGTGCCTTGCAAAAAACACTTTCATATTAAGAATGTGCCTGAGGCTGCTTTAC
TCTGGAATAGTCTCAGATCTAAAATCTCCTTTACATAACGTGGCATATGTAAGTTTTGCT
TCACCAGAACTGTTTAGAATGCTATTTCAAATGTTGCCATTCTCTTAGATTTGCTAATTA
TGTACCCACCTCTGATTTGACTCCTCCTGAAATGATAGGATCTGTCGTTCCAAAGGTGAT
AAACTTGAAATTACCGGAATCCGTGTTTTACTTGAAATTCTGCAGAATACCCAGATGGAG
TGAAAAATAATAGAAAGGGTTTTGTGCAATGACTAAAAAGGTAAAACACTGTTAAGTTTC
AAGAATAAATACTTTCAACCCAAATACTTTCAACCTCTGCTTGACTATATATTATGGAAT
AGTAACCTTTTAGGATTTTCAAAATTGGCATCTAAAACTTTCAAGGGAGGTGGCTCCCAG
ATGGTACCATTTGCTCTTTCCTAGCTAACCCTAGATATGGCAGCTCTTTAATGTACTTCA
AAAAGCAGATATATATTACTAAGGAAAAAAATTATTTATAATTGCCTTGTCATAATTGTT
AAGGTGTTCTAGAGCCATTTGCATACAATTTAATGTAATTTCATTCCATTCTATTGTTTA
CACACCGATTACTCGAAGATGACTGCAAAGGTAAAAGGAAAATAAAAGTGTATTATTGCA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-904, gnl|bosTau2|chr2 (20927625-20926728)
               

               
               1-904, gnl|Hg17|chr2 (168636925-168636041)
               

               
               1-904, gnl|Mm7|chr2 (68141876-68140997)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-904, gnl|bosTau2|chr2 (20927625-20926728)
               

               
               1-904, gnl|Hg17|chr2 (168636925-168636041)
               

               
               1-904, gnl|Mm7|chr2 (68141876-68140997)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               lyg (0.532411)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               tra (0.246184)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.532411)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               tra (0.246184)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	1-904, gnl\|bosTau2\|chr2 (20927625-20926728)
	1-904, gnl\|Hg17\|chr2 (168636925-168636041)
	1-904, gnl\|Mm7\|chr2 (68141876-68140997)

	lyg (0.532411)
	thg (0.380373)
	sag (0.36543)
	fbs (0.350693)
	fco (0.314416)
	tra (0.246184)
	rec (0.17307)
	nco (0.161734)
	hyp (0.142837)
	spc (0.113366)