Ss1.1-Pig4-TMW8014K15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTTATAAACATATTTTAAAACTCAGCCATTAAATGTGTAACTTTTATTGGTGTTAAAC AGTTTTAATAGTTGTATGGATTTGGTCCTTTAACCTACCTGTGTATGTTTTAACTTTCCA TTAGGCTTGATTCTTTTGTTGGATGGTTTTCCTTATCTTACTTTTAACATAAGTGTTTCC ATTTCGTTAAAAAAATTTGTGTAAGCCACTTAAGATTCTCTATAGAATCAGAAGGGGGTA AAGCACCCCATGTGTCTTCTAAGGTTGTAGAGATATAAAGAAATGGATGATATTAGAAAT GTCAAAAGTTGAAAGCCCTTTACTTATATAATGAAGAATAGGGTCAGAATGAGATGTATA ATAGAACTTAACGGTGGCCTTAATCAATATCAGGGAATTTGAAAAAACTAGAAAGAAACT GTATCCATTCTTTTCTTGACCTCTCAAATCCTGAGAAGGAATTTGCGTCTGACTCTTCTC TCAACTATGCCTAGTTTTAGATTCCAGCTATAATAGTGGTTTATTTGTATAAATCTACTA ATTTGCCTTTAAATTTTATTTCTGCTCCACACCAACACCATGTCAGTTTATCAGCCTTTT GAAAACAGTGAAGACAACAGTGAAACTGACCATTCGTGCTGAGAATGCAGATTCCCAGGC TGTTGCTTCAGCAGCTGGTACAGCCAATGGAGAAAAAAAGAACAGCCCCCCGTCTCCGAT TGTCCCGCCATCTGGCTCCCCGGAACCAGAGTCTATCCGAAGTACAAGTAGGTCATCAAC ACCAGCAATCTTTGCCTCTGACCCTGCAACCTGCCCCATCATCCCAGGCTGTGAAACAAC AATTGAGATTTCCAAAGGGCGGACAGGGTTGGGCCTGAGCATTGTCGGGGGTGCGGACAC ACTGCTGGGTGCCATTATTATCCATGAGGTTTACGAAGAAGGAGCAGCATGTAAAGACGG GAGACTCTGGGCTGGAGATCAGATTTTAGAGGTGAATGGCATTGACTTGAGAAAAGCCAC ACATGATGAAGCAATAAATGTCCTGAGACAGACACCACAAAGGGTGCGCCTGATGCTCTA CAGAGATGAGGCCCCATACAGAGAGGAGGACGTGTATGACACCCTCACCATTGAGCTGCA GAAGAAGCCGGGGAAAGGCCTGGGGTTGAGTATTGTTGGTAAAAGAAATGATACTGGAGT ATTTGTGTCTGACGGTGTCAAAGGAGGAATTGCAGATGCTGATGGAAGACTGATGCAGGG AGACCAGATACTGATGGTGAACGGGGAAGATGTCCGTCATGCCACCCAGGAAGCTGTCGC AGCTCTGCTAAAGTGTTCCCTAGGCACAGTAACCTTGGAAGTTGGAAGAGTCAAAGCTGG TCCATTCCATTCTGAAAGGAGGCCTTCTCAAAGCAGCCAGATGAGTGAAGGCAGCCTGTC ATCGTTTACTTTTCCACTTTCGGGCTCCAGTACATCTGAGTCACTGGAAAGTAGCTCAAA GAAGAATGCATGTAAGATTGGTTTGAAATTTTAAGCATGACTTACTGGTTTGAATTTTGA CCGTCAATGCTGATTTTTTTCCCTGTTTTACTCTGAAGCTCTCTTTCCTCTAAATCATCC CAATCCTAATACAGGTGCAAAAATGAGTGCCAGCAGAAATTTGGAACAGCATGAAATGAT GCCTATGGTGGCATTTCCCATTTGATGTTTTCCCTATGTGATATTCTAAACATTAGAAGC AAGATTCTAATGTTTCTTACAAACAGATTGGTATATTTGATTTTTATTCCCTTTCTCTAT TTGATGTAACACTAATACCTCAAAAGATGCCATTAAGTGAAGCCTTCTTTCCATGAAGAT TGCAAAAATTTTGATTGAGAAAATTAATATGATCCTCCTGTGTTTTAATTACATGAAATC ATGATGCAGAGGGTTTTTTTGGCTTGGAGCGTTGGTTGAAAGTTGTTCAAATTGAAGAAA CTAACCATATGGCAGTCTCTGTTTGCAATGTGACTAATATTCTAGAAATTTAGGCCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTTATAAACATATTTTAAAACTCAGCCATTAAATGTGTAACTTTTATTGGTGTTAAAC AGTTTTAATAGTTGTATGGATTTGGTCCTTTAACCTACCTGTGTATGTTTTAACTTTCCA TTAGGCTTGATTCTTTTGTTGGATGGTTTTCCTTATCTTACTTTTAACATAAGTGTTTCC ATTTCGTTAAAAAAATTTGTGTAAGCCACTTAAGATTCTCTATAGAATCAGAAGGGGGTA AAGCACCCCATGTGTCTTCTAAGGTTGTAGAGATATAAAGAAATGGATGATATTAGAAAT GTCAAAAGTTGAAAGCCCTTTACTTATATAATGAAGAATAGGGTCAGAATGAGATGTATA ATAGAACTTAACGGTGGCCTTAATCAATATCAGGGAATTTGAAAAAACTAGAAAGAAACT GTATCCATTCTTTTCTTGACCTCTCAAATCCTGAGAAGGAATTTGCGTCTGACTCTTCTC TCAACTATGCCTAGTTTTAGATTCCAGCTATAATAGTGGTTTATTTGTATAAATCTACTA ATTTGCCTTTAAATTTTATTTCTGCTCCACACCAACACCATGTCAGTTTATCAGCCTTTT GAAAACAGTGAAGACAACAGTGAAACTGACCATTCGTGCTGAGAATGCAGATTCCCAGGC TGTTGCTTCAGCAGCTGGTACAGCCAATGGAGAAAAAAAGAACAGCCCCCCGTCTCCGAT TGTCCCGCCATCTGGCTCCCCGGAACCAGAGTCTATCCGAAGTACAAGTAGGTCATCAAC ACCAGCAATCTTTGCCTCTGACCCTGCAACCTGCCCCATCATCCCAGGCTGTGAAACAAC AATTGAGATTTCCAAAGGGCGGACAGGGTTGGGCCTGAGCATTGTCGGGGGTGCGGACAC ACTGCTGGGTGCCATTATTATCCATGAGGTTTACGAAGAAGGAGCAGCATGTAAAGACGG GAGACTCTGGGCTGGAGATCAGATTTTAGAGGTGAATGGCATTGACTTGAGAAAAGCCAC ACATGATGAAGCAATAAATGTCCTGAGACAGACACCACAAAGGGTGCGCCTGATGCTCTA CAGAGATGAGGCCCCATACAGAGAGGAGGACGTGTATGACACCCTCACCATTGAGCTGCA GAAGAAGCCGGGGAAAGGCCTGGGGTTGAGTATTGTTGGTAAAAGAAATGATACTGGAGT ATTTGTGTCTGACGGTGTCAAAGGAGGAATTGCAGATGCTGATGGAAGACTGATGCAGGG AGACCAGATACTGATGGTGAACGGGGAAGATGTCCGTCATGCCACCCAGGAAGCTGTCGC AGCTCTGCTAAAGTGTTCCCTAGGCACAGTAACCTTGGAAGTTGGAAGAGTCAAAGCTGG TCCATTCCATTCTGAAAGGAGGCCTTCTCAAAGCAGCCAGATGAGTGAAGGCAGCCTGTC ATCGTTTACTTTTCCACTTTCGGGCTCCAGTACATCTGAGTCACTGGAAAGTAGCTCAAA GAAGAATGCATGTAAGATTGGTTTGAAATTTTAAGCATGACTTACTGGTTTGAATTTTGA CCGTCAATGCTGATTTTTTTCCCTGTTTTACTCTGAAGCTCTCTTTCCTCTAAATCATCC CAATCCTAATACAGGTGCAAAAATGAGTGCCAGCAGAAATTTGGAACAGCATGAAATGAT GCCTATGGTGGCATTTCCCATTTGATGTTTTCCCTATGTGATATTCTAAACATTAGAAGC AAGATTCTAATGTTTCTTACAAACAGATTGGTATATTTGATTTTTATTCCCTTTCTCTAT TTGATGTAACACTAATACCTCAAAAGATGCCATTAAGTGAAGCCTTCTTTCCATGAAGAT TGCAAAAATTTTGATTGAGAAAATTAATATGATCCTCCTGTGTTTTAATTACATGAAATC ATGATGCAGAGGGTTTTTTTGGCTTGGAGCGTTGGTTGAAAGTTGTTCAAATTGAAGAAA CTAACCATATGGCAGTCTCTGTTTGCAATGTGACTAATATTCTAGAAATTTAGGCCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 608-727, + strand, RNAz p=0.65737 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 608-727, + strand, RNAz p=0.65737 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 227-764, gnl|bosTau2|chr8 (14836113-14836634) | |
| 227-764, gnl|Hg17|chr9 (13115743-13115212) | |
| 227-764, gnl|Mm7|chr4 (80700245-80699142) | |
| 987-1191, gnl|bosTau2|chr8 (14840412-14840616) | |
| 987-1191, gnl|canFam2|chr11 (36730678-36730920) | |
| 987-1191, gnl|danRer3|chr1 (40735603-40735822) | |
| 987-1191, gnl|dasNov1|scaffold_1158 (53139-53376) | |
| 987-1191, gnl|echTel1|scaffold_311279 (61945-62186) | |
| 987-1191, gnl|fr1|chrUn (90016365-90016135) | |
| 987-1191, gnl|galGal2|chrZ_random (2169015-2168792) | |
| 987-1191, gnl|hg17|chr9 (13111718-13111964) | |
| 987-1191, gnl|Hg17|chr9 (13111936-13111732) | |
| 987-1191, gnl|loxAfr1|scaffold_1830 (85838-86074) | |
| 987-1191, gnl|mm7|chr4 (80696126-80696370) | |
| 987-1191, gnl|Mm7|chr4 (80696343-80696140) | |
| 987-1191, gnl|monDom2|scaffold_5 (101624690-101624449) | |
| 987-1191, gnl|oryCun1|scaffold_140988 (27515-27269) | |
| 987-1191, gnl|panTro1|chr11 (13307549-13307795) | |
| 987-1191, gnl|rheMac2|chr15 (63803508-63803262) | |
| 987-1191, gnl|rn3|chr5 (100028588-100028832) | |
| 987-1191, gnl|tetNig1|chrUn_random (56226384-56226179) | |
| 987-1191, gnl|xenTro1|scaffold_607 (109516-109730) | |
| 1419-2035, gnl|bosTau2|chr8 (14846337-14846964) | |
| 1419-2035, gnl|Hg17|chr9 (13104022-13103411) | |
| 1419-2035, gnl|Mm7|chr4 (80690186-80689575) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 227-764, gnl|bosTau2|chr8 (14836113-14836634) | |
| 227-764, gnl|Hg17|chr9 (13115743-13115212) | |
| 227-764, gnl|Mm7|chr4 (80700245-80699142) | |
| 987-1191, gnl|bosTau2|chr8 (14840412-14840616) | |
| 987-1191, gnl|canFam2|chr11 (36730678-36730920) | |
| 987-1191, gnl|danRer3|chr1 (40735603-40735822) | |
| 987-1191, gnl|dasNov1|scaffold_1158 (53139-53376) | |
| 987-1191, gnl|echTel1|scaffold_311279 (61945-62186) | |
| 987-1191, gnl|fr1|chrUn (90016365-90016135) | |
| 987-1191, gnl|galGal2|chrZ_random (2169015-2168792) | |
| 987-1191, gnl|hg17|chr9 (13111718-13111964) | |
| 987-1191, gnl|Hg17|chr9 (13111936-13111732) | |
| 987-1191, gnl|loxAfr1|scaffold_1830 (85838-86074) | |
| 987-1191, gnl|mm7|chr4 (80696126-80696370) | |
| 987-1191, gnl|Mm7|chr4 (80696343-80696140) | |
| 987-1191, gnl|monDom2|scaffold_5 (101624690-101624449) | |
| 987-1191, gnl|oryCun1|scaffold_140988 (27515-27269) | |
| 987-1191, gnl|panTro1|chr11 (13307549-13307795) | |
| 987-1191, gnl|rheMac2|chr15 (63803508-63803262) | |
| 987-1191, gnl|rn3|chr5 (100028588-100028832) | |
| 987-1191, gnl|tetNig1|chrUn_random (56226384-56226179) | |
| 987-1191, gnl|xenTro1|scaffold_607 (109516-109730) | |
| 1419-2035, gnl|bosTau2|chr8 (14846337-14846964) | |
| 1419-2035, gnl|Hg17|chr9 (13104022-13103411) | |
| 1419-2035, gnl|Mm7|chr4 (80690186-80689575) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |