Ss1.1-Pig4-TMW8014M15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCCTGTATGCTAATGACTTATCAGGCGAACCGACTTCTTTCCAGCATGCAAAGAAGGC AAATGACTCAAACAAAATCCAACCTCAAAAGAAGCAGTCCACTTTTGAGAGCCAGGAACA TGAGGTGGTGTCTCCTAGCAATTCAGGAAAGAGAAGCAGAAATCCTACTTCTAGTCTGTT GCCAGTTGAAGACAAGAAATCTTTAAGTGTTGCAGCCAAAACTCCCAGGAGAGGCTTTGA TGAGGACTCTTGCCACAGGACTGGGAAGTCAGGAGATGACTCTGAAAACAGGCCCATTTT GAGCAGCCGCAAGGCCCCTGAGAAATCAGAGTTTTCCAGGAGAGACACTCAGGAAAACAA AACTAACTTCCCACTTCCTTTTAATAGTTCATCAGACGTTAATGCTAAGGATAAGCATGC TGAAGATAATCAGAAGCGTTTGGCGGCCTTAGAGGCAAGGCAGAAAGCAAAAGGAATACA AAAAAAGTTAGTTCATAATGCTCTGGCAAATTTGGATGGTCATCCAGAGGACAAGCCGAC GCATATCATCTTTGGTTCCAACAGTGAAAGTGAAACAGAAGAGACATCCACTCAGGAGCA AAGCCAGCCAGAAGAGGAACCGGTGAAAGAGTCCATGGGTAGAGCTTCTGGGAAGCTCTT CGACAGCAGTGATGATGAATCTGGTTCTGAAGATGATAGCAATAGGTTCAAAATTAAACC TCAGTTTGAGGGCAGAGCTGGACAGAAGCTCATGGATTTGCAGTCCCACTTTGGCACTGA TGACAGGTTTCGCATGGACTCTCGATTTCTAGAAAGTGACAGCGAAGAGGAACAGGAAGA CACAAGTGAAACGAAGACTGCTGCGGAGGAAGAGATTGCTGCAGAAAAGTTGAAAGCCCT GAATATTGTGCAAAGTGTTTTGCACATCAACGTAAGCAGTTCTACAAGCAAAGGATCAGT AGCTGCTAAGAAATTTAAGGATGTCATACATTATGATCCAACAAGGCATGACCATGCTAC CTATGAAAGAAAGAAAGATGATAAACCAAAAGAAAGTAAAGCAAAACGAAAGAAGAAAAG GGAAGAAGCTGAGAAGCTACCTGAGGTGTCCAAAGAAATGTATTATAACATATCTGTGGA TTTAAAACAAATATTCCAAACTGCAAAAGATACCAGTGAAAAAAGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCCTGTATGCTAATGACTTATCAGGCGAACCGACTTCTTTCCAGCATGCAAAGAAGGC AAATGACTCAAACAAAATCCAACCTCAAAAGAAGCAGTCCACTTTTGAGAGCCAGGAACA TGAGGTGGTGTCTCCTAGCAATTCAGGAAAGAGAAGCAGAAATCCTACTTCTAGTCTGTT GCCAGTTGAAGACAAGAAATCTTTAAGTGTTGCAGCCAAAACTCCCAGGAGAGGCTTTGA TGAGGACTCTTGCCACAGGACTGGGAAGTCAGGAGATGACTCTGAAAACAGGCCCATTTT GAGCAGCCGCAAGGCCCCTGAGAAATCAGAGTTTTCCAGGAGAGACACTCAGGAAAACAA AACTAACTTCCCACTTCCTTTTAATAGTTCATCAGACGTTAATGCTAAGGATAAGCATGC TGAAGATAATCAGAAGCGTTTGGCGGCCTTAGAGGCAAGGCAGAAAGCAAAAGGAATACA AAAAAAGTTAGTTCATAATGCTCTGGCAAATTTGGATGGTCATCCAGAGGACAAGCCGAC GCATATCATCTTTGGTTCCAACAGTGAAAGTGAAACAGAAGAGACATCCACTCAGGAGCA AAGCCAGCCAGAAGAGGAACCGGTGAAAGAGTCCATGGGTAGAGCTTCTGGGAAGCTCTT CGACAGCAGTGATGATGAATCTGGTTCTGAAGATGATAGCAATAGGTTCAAAATTAAACC TCAGTTTGAGGGCAGAGCTGGACAGAAGCTCATGGATTTGCAGTCCCACTTTGGCACTGA TGACAGGTTTCGCATGGACTCTCGATTTCTAGAAAGTGACAGCGAAGAGGAACAGGAAGA CACAAGTGAAACGAAGACTGCTGCGGAGGAAGAGATTGCTGCAGAAAAGTTGAAAGCCCT GAATATTGTGCAAAGTGTTTTGCACATCAACGTAAGCAGTTCTACAAGCAAAGGATCAGT AGCTGCTAAGAAATTTAAGGATGTCATACATTATGATCCAACAAGGCATGACCATGCTAC CTATGAAAGAAAGAAAGATGATAAACCAAAAGAAAGTAAAGCAAAACGAAAGAAGAAAAG GGAAGAAGCTGAGAAGCTACCTGAGGTGTCCAAAGAAATGTATTATAACATATCTGTGGA TTTAAAACAAATATTCCAAACTGCAAAAGATACCAGTGAAAAAAGAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 4-515, gnl|bosTau2|chr8 (46669002-46669516) | |
| 4-515, gnl|Hg17|chr9 (92156611-92156103) | |
| 4-515, gnl|Mm7|chr13 (49146139-49146653) | |
| 629-748, gnl|bosTau2|chr8 (46671327-46671449) | |
| 629-748, gnl|canFam2|chr1 (102100229-102100110) | |
| 629-748, gnl|canFam2|chr1 (102100236-102100120) | |
| 629-748, gnl|danRer3|chr22 (9119836-9119923) | |
| 629-748, gnl|danRer3|chr6 (30537320-30537434) | |
| 629-748, gnl|dasNov1|scaffold_55915 (10227-10106) | |
| 629-748, gnl|dasNov1|scaffold_55915 (10232-10116) | |
| 629-748, gnl|echTel1|scaffold_161616 (8492-8371) | |
| 629-748, gnl|echTel1|scaffold_161616 (8497-8381) | |
| 629-748, gnl|fr1|chrUn (232051760-232051850) | |
| 629-748, gnl|galGal2|chr12 (3524617-3524513) | |
| 629-748, gnl|galGal2|chr12 (3524623-3524513) | |
| 629-748, gnl|hg17|chr4 (166827213-166827335) | |
| 629-748, gnl|hg17|chr9 (92152386-92152502) | |
| 629-748, gnl|Hg17|chr9 (92152512-92152390) | |
| 629-748, gnl|loxAfr1|scaffold_1174 (139474-139353) | |
| 629-748, gnl|loxAfr1|scaffold_1174 (139479-139363) | |
| 629-748, gnl|mm7|chr13 (49148726-49148607) | |
| 629-748, gnl|mm7|chr13 (49148733-49148617) | |
| 629-748, gnl|Mm7|chr13 (49148605-49148727) | |
| 629-748, gnl|monDom2|scaffold_237 (518289-518402) | |
| 629-748, gnl|monDom2|scaffold_237 (518284-518400) | |
| 629-748, gnl|oryCun1|scaffold_180671 (9470-9351) | |
| 629-748, gnl|oryCun1|scaffold_180671 (9477-9361) | |
| 629-748, gnl|panTro1|chr3 (184268291-184268413) | |
| 629-748, gnl|panTro1|chrUn_random (27707642-27707758) | |
| 629-748, gnl|rheMac2|chr15 (104215411-104215527) | |
| 629-748, gnl|rheMac2|chr5 (157734935-157735057) | |
| 629-748, gnl|rn3|chr17 (20958016-20958135) | |
| 629-748, gnl|rn3|chr17 (20958009-20958125) | |
| 629-748, gnl|tetNig1|chrUn_random (12182018-12182097) | |
| 629-748, gnl|tetNig1|chrUn_random (12182011-12182097) | |
| 629-748, gnl|xenTro1|scaffold_425 (304470-304595) | |
| 837-988, gnl|bosTau2|chr8 (46675551-46675702) | |
| 837-988, gnl|canFam2|chr1 (102102744-102102615) | |
| 837-988, gnl|canFam2|chr1 (102102773-102102592) | |
| 837-988, gnl|danRer3|chr22 (9118184-9118396) | |
| 837-988, gnl|danRer3|chr6 (30535745-30535881) | |
| 837-988, gnl|dasNov1|scaffold_18802 (2541-2411) | |
| 837-988, gnl|dasNov1|scaffold_18802 (2557-2387) | |
| 837-988, gnl|echTel1|scaffold_323764 (5689-5853) | |
| 837-988, gnl|galGal2|chr12 (3526213-3526069) | |
| 837-988, gnl|galGal2|chr12 (3526233-3526053) | |
| 837-988, gnl|hg17|chr4 (166826988-166827123) | |
| 837-988, gnl|hg17|chr9 (92148701-92148877) | |
| 837-988, gnl|Hg17|chr9 (92148864-92148713) | |
| 837-988, gnl|loxAfr1|scaffold_1174 (143338-143197) | |
| 837-988, gnl|loxAfr1|scaffold_1174 (143360-143185) | |
| 837-988, gnl|mm7|chr13 (49151368-49151231) | |
| 837-988, gnl|mm7|chr13 (49151391-49151220) | |
| 837-988, gnl|Mm7|chr13 (49151231-49151377) | |
| 837-988, gnl|monDom2|scaffold_237 (515124-515261) | |
| 837-988, gnl|monDom2|scaffold_237 (515094-515281) | |
| 837-988, gnl|oryCun1|scaffold_180671 (13072-12932) | |
| 837-988, gnl|oryCun1|scaffold_180671 (13095-12919) | |
| 837-988, gnl|panTro1|chr3 (184268067-184268201) | |
| 837-988, gnl|panTro1|chrUn_random (27703941-27704117) | |
| 837-988, gnl|rheMac2|chr15 (104211410-104211586) | |
| 837-988, gnl|rheMac2|chr5 (157734707-157734845) | |
| 837-988, gnl|rn3|chr17 (20955601-20955736) | |
| 837-988, gnl|rn3|chr17 (20955578-20955749) | |
| 1055-1182, gnl|bosTau2|chr8 (46681373-46681500) | |
| 1055-1182, gnl|canFam2|chr1 (102108454-102108186) | |
| 1055-1182, gnl|canFam2|chr1 (102108456-102108177) | |
| 1055-1182, gnl|danRer3|chr22 (9117764-9118027) | |
| 1055-1182, gnl|danRer3|chr6 (30535227-30535526) | |
| 1055-1182, gnl|echTel1|scaffold_308651 (2576-2847) | |
| 1055-1182, gnl|echTel1|scaffold_308651 (2574-2856) | |
| 1055-1182, gnl|fr1|chrUn (232049405-232049702) | |
| 1055-1182, gnl|galGal2|chr12 (3528547-3528273) | |
| 1055-1182, gnl|galGal2|chr12 (3528549-3528266) | |
| 1055-1182, gnl|hg17|chr4 (166826641-166826910) | |
| 1055-1182, gnl|hg17|chr9 (92143387-92143669) | |
| 1055-1182, gnl|Hg17|chr9 (92143661-92143534) | |
| 1055-1182, gnl|loxAfr1|scaffold_1174 (151986-151718) | |
| 1055-1182, gnl|loxAfr1|scaffold_1174 (151988-151709) | |
| 1055-1182, gnl|mm7|chr13 (49156699-49156430) | |
| 1055-1182, gnl|mm7|chr13 (49156703-49156422) | |
| 1055-1182, gnl|Mm7|chr13 (49156427-49156554) | |
| 1055-1182, gnl|monDom2|scaffold_237 (514492-514742) | |
| 1055-1182, gnl|oryCun1|scaffold_180671 (18840-18571) | |
| 1055-1182, gnl|oryCun1|scaffold_180671 (18844-18562) | |
| 1055-1182, gnl|panTro1|chr3 (184267720-184267989) | |
| 1055-1182, gnl|panTro1|chrUn_random (27698633-27698915) | |
| 1055-1182, gnl|rheMac2|chr15 (104205499-104205781) | |
| 1055-1182, gnl|rheMac2|chr5 (157734358-157734629) | |
| 1055-1182, gnl|rn3|chr17 (20950451-20950720) | |
| 1055-1182, gnl|rn3|chr17 (20950447-20950729) | |
| 1055-1182, gnl|tetNig1|chrUn_random (12178899-12179142) | |
| 1055-1182, gnl|tetNig1|chrUn_random (12178899-12179161) | |
| 1055-1182, gnl|xenTro1|scaffold_425 (302072-302341) | |
| 1055-1182, gnl|xenTro1|scaffold_425 (302067-302363) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-515, gnl|bosTau2|chr8 (46669002-46669516) | |
| 4-515, gnl|Hg17|chr9 (92156611-92156103) | |
| 4-515, gnl|Mm7|chr13 (49146139-49146653) | |
| 629-748, gnl|bosTau2|chr8 (46671327-46671449) | |
| 629-748, gnl|canFam2|chr1 (102100229-102100110) | |
| 629-748, gnl|canFam2|chr1 (102100236-102100120) | |
| 629-748, gnl|danRer3|chr22 (9119836-9119923) | |
| 629-748, gnl|danRer3|chr6 (30537320-30537434) | |
| 629-748, gnl|dasNov1|scaffold_55915 (10227-10106) | |
| 629-748, gnl|dasNov1|scaffold_55915 (10232-10116) | |
| 629-748, gnl|echTel1|scaffold_161616 (8492-8371) | |
| 629-748, gnl|echTel1|scaffold_161616 (8497-8381) | |
| 629-748, gnl|fr1|chrUn (232051760-232051850) | |
| 629-748, gnl|galGal2|chr12 (3524617-3524513) | |
| 629-748, gnl|galGal2|chr12 (3524623-3524513) | |
| 629-748, gnl|hg17|chr4 (166827213-166827335) | |
| 629-748, gnl|hg17|chr9 (92152386-92152502) | |
| 629-748, gnl|Hg17|chr9 (92152512-92152390) | |
| 629-748, gnl|loxAfr1|scaffold_1174 (139474-139353) | |
| 629-748, gnl|loxAfr1|scaffold_1174 (139479-139363) | |
| 629-748, gnl|mm7|chr13 (49148726-49148607) | |
| 629-748, gnl|mm7|chr13 (49148733-49148617) | |
| 629-748, gnl|Mm7|chr13 (49148605-49148727) | |
| 629-748, gnl|monDom2|scaffold_237 (518289-518402) | |
| 629-748, gnl|monDom2|scaffold_237 (518284-518400) | |
| 629-748, gnl|oryCun1|scaffold_180671 (9470-9351) | |
| 629-748, gnl|oryCun1|scaffold_180671 (9477-9361) | |
| 629-748, gnl|panTro1|chr3 (184268291-184268413) | |
| 629-748, gnl|panTro1|chrUn_random (27707642-27707758) | |
| 629-748, gnl|rheMac2|chr15 (104215411-104215527) | |
| 629-748, gnl|rheMac2|chr5 (157734935-157735057) | |
| 629-748, gnl|rn3|chr17 (20958016-20958135) | |
| 629-748, gnl|rn3|chr17 (20958009-20958125) | |
| 629-748, gnl|tetNig1|chrUn_random (12182018-12182097) | |
| 629-748, gnl|tetNig1|chrUn_random (12182011-12182097) | |
| 629-748, gnl|xenTro1|scaffold_425 (304470-304595) | |
| 837-988, gnl|bosTau2|chr8 (46675551-46675702) | |
| 837-988, gnl|canFam2|chr1 (102102744-102102615) | |
| 837-988, gnl|canFam2|chr1 (102102773-102102592) | |
| 837-988, gnl|danRer3|chr22 (9118184-9118396) | |
| 837-988, gnl|danRer3|chr6 (30535745-30535881) | |
| 837-988, gnl|dasNov1|scaffold_18802 (2541-2411) | |
| 837-988, gnl|dasNov1|scaffold_18802 (2557-2387) | |
| 837-988, gnl|echTel1|scaffold_323764 (5689-5853) | |
| 837-988, gnl|galGal2|chr12 (3526213-3526069) | |
| 837-988, gnl|galGal2|chr12 (3526233-3526053) | |
| 837-988, gnl|hg17|chr4 (166826988-166827123) | |
| 837-988, gnl|hg17|chr9 (92148701-92148877) | |
| 837-988, gnl|Hg17|chr9 (92148864-92148713) | |
| 837-988, gnl|loxAfr1|scaffold_1174 (143338-143197) | |
| 837-988, gnl|loxAfr1|scaffold_1174 (143360-143185) | |
| 837-988, gnl|mm7|chr13 (49151368-49151231) | |
| 837-988, gnl|mm7|chr13 (49151391-49151220) | |
| 837-988, gnl|Mm7|chr13 (49151231-49151377) | |
| 837-988, gnl|monDom2|scaffold_237 (515124-515261) | |
| 837-988, gnl|monDom2|scaffold_237 (515094-515281) | |
| 837-988, gnl|oryCun1|scaffold_180671 (13072-12932) | |
| 837-988, gnl|oryCun1|scaffold_180671 (13095-12919) | |
| 837-988, gnl|panTro1|chr3 (184268067-184268201) | |
| 837-988, gnl|panTro1|chrUn_random (27703941-27704117) | |
| 837-988, gnl|rheMac2|chr15 (104211410-104211586) | |
| 837-988, gnl|rheMac2|chr5 (157734707-157734845) | |
| 837-988, gnl|rn3|chr17 (20955601-20955736) | |
| 837-988, gnl|rn3|chr17 (20955578-20955749) | |
| 1055-1182, gnl|bosTau2|chr8 (46681373-46681500) | |
| 1055-1182, gnl|canFam2|chr1 (102108454-102108186) | |
| 1055-1182, gnl|canFam2|chr1 (102108456-102108177) | |
| 1055-1182, gnl|danRer3|chr22 (9117764-9118027) | |
| 1055-1182, gnl|danRer3|chr6 (30535227-30535526) | |
| 1055-1182, gnl|echTel1|scaffold_308651 (2576-2847) | |
| 1055-1182, gnl|echTel1|scaffold_308651 (2574-2856) | |
| 1055-1182, gnl|fr1|chrUn (232049405-232049702) | |
| 1055-1182, gnl|galGal2|chr12 (3528547-3528273) | |
| 1055-1182, gnl|galGal2|chr12 (3528549-3528266) | |
| 1055-1182, gnl|hg17|chr4 (166826641-166826910) | |
| 1055-1182, gnl|hg17|chr9 (92143387-92143669) | |
| 1055-1182, gnl|Hg17|chr9 (92143661-92143534) | |
| 1055-1182, gnl|loxAfr1|scaffold_1174 (151986-151718) | |
| 1055-1182, gnl|loxAfr1|scaffold_1174 (151988-151709) | |
| 1055-1182, gnl|mm7|chr13 (49156699-49156430) | |
| 1055-1182, gnl|mm7|chr13 (49156703-49156422) | |
| 1055-1182, gnl|Mm7|chr13 (49156427-49156554) | |
| 1055-1182, gnl|monDom2|scaffold_237 (514492-514742) | |
| 1055-1182, gnl|oryCun1|scaffold_180671 (18840-18571) | |
| 1055-1182, gnl|oryCun1|scaffold_180671 (18844-18562) | |
| 1055-1182, gnl|panTro1|chr3 (184267720-184267989) | |
| 1055-1182, gnl|panTro1|chrUn_random (27698633-27698915) | |
| 1055-1182, gnl|rheMac2|chr15 (104205499-104205781) | |
| 1055-1182, gnl|rheMac2|chr5 (157734358-157734629) | |
| 1055-1182, gnl|rn3|chr17 (20950451-20950720) | |
| 1055-1182, gnl|rn3|chr17 (20950447-20950729) | |
| 1055-1182, gnl|tetNig1|chrUn_random (12178899-12179142) | |
| 1055-1182, gnl|tetNig1|chrUn_random (12178899-12179161) | |
| 1055-1182, gnl|xenTro1|scaffold_425 (302072-302341) | |
| 1055-1182, gnl|xenTro1|scaffold_425 (302067-302363) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| che (0.136314) | |
| ste (0.135208) | |
| kid (0.129735) | |
| bla (0.124347) | |
| ebs (0.118301) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) | |
| ste (0.135208) | |
| kid (0.129735) | |
| bla (0.124347) | |
| ebs (0.118301) |