Non-Coding RNA Search

Ss1.1-Pig4-TMW8014M19.3

Sequence:


               
               GCAGAAATGCACTAGCAAGAGCCCAAGTGCACACAAGGACTTAATGAAAAACTGTATTCC
TAATAACCAGCTAAGCAAACCAGATGCACTGGTAAGGCTGGAACAAGACATTAAAAAATT
AAAGGCTGACCTGCAGGCCAGCAGGCAAGTGGAACAGGAGCTCCGCAGTCAGATCAGCTC
CCTCTCCAGCACCGAACGAGGGATCCGCTCAGAAATGGGCCAGCTCCGGCAGGAGAATGA
GCTGCTGCAGAACAAGTTGCATAATGCTGTGCAAATGAAGCAAAAAGACAAGCAGAATAT
CAGCCAGTTGGAGAAAAAGCTAAAAGCTGAACAAGAAGCTCGAAGTTTTGTAGAAAAGCA
GCTAATGGAGGAGAAAAAAAGGAAGAAGTTAGAAGAAGCTACTGCTGCCCGGGCTGTTGC
ATTTGCTGCTGCATCTAGGGGAGAGTGCACCGAAACCTTACGGAATCGGATCAGAGAATT
AGAAGCAGAGGGCAAAAAGCTCACGATGGACATGAAGGTGAAAGAAGACCAGATCAGAGA
ACTAGAACTGAAAGTCCAGGAGCTTCGGAAGTATAAGGAAAATGAGAAGGACACCGAGGT
GTTAATGTCAGCCCTCTCAGCCATGCAGGATAAAACACAGCACCTGGAGAACAGCCTGAG
CGCAGAGACACGAATCAAGCTGGACCTGTTCTCTGCACTGGGGGACGCAAAGCGACAGCT
GGAGATTGCCCAAGGACAAATTCTTCAGAAGGACCAGGAAATCAAGGACCTCAAACAGAA
GATAGCCGAAGTCATGGCCGTCATGCCCAGCATAACGTACAGTGCTGCCACCAGCCCCCT
GAGCCCTGTTTCCCCCCACTACTCTTCCAAATTTGTGGAGACCAGCCCCTCTGGACTTGA
TCCCAATGCCTCTGTTTACCAGCCCCTGAAGAAATGAAGGCCAGCAGTGTGTTTTGTCCA
ACCATTGGGTTTTCAGAAGGCATCTCAAAGGAGCGTCTCTGGCAGTCAAGATAAAAAAAG
TTTATATTGTATTTTGTGGGACTGTATATGTTGTCGTTTTTTAAAAGGGGGGAAAGATAA
CATCCAAGTCCGATTAGAACTGCCCATCAGTTTTTCTTGTAAATTTTTAGAAGACCTCAC
AGAACTTGGCAGTTTATTTTTTTCGGCCAATACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAAATGCACTAGCAAGAGCCCAAGTGCACACAAGGACTTAATGAAAAACTGTATTCC
TAATAACCAGCTAAGCAAACCAGATGCACTGGTAAGGCTGGAACAAGACATTAAAAAATT
AAAGGCTGACCTGCAGGCCAGCAGGCAAGTGGAACAGGAGCTCCGCAGTCAGATCAGCTC
CCTCTCCAGCACCGAACGAGGGATCCGCTCAGAAATGGGCCAGCTCCGGCAGGAGAATGA
GCTGCTGCAGAACAAGTTGCATAATGCTGTGCAAATGAAGCAAAAAGACAAGCAGAATAT
CAGCCAGTTGGAGAAAAAGCTAAAAGCTGAACAAGAAGCTCGAAGTTTTGTAGAAAAGCA
GCTAATGGAGGAGAAAAAAAGGAAGAAGTTAGAAGAAGCTACTGCTGCCCGGGCTGTTGC
ATTTGCTGCTGCATCTAGGGGAGAGTGCACCGAAACCTTACGGAATCGGATCAGAGAATT
AGAAGCAGAGGGCAAAAAGCTCACGATGGACATGAAGGTGAAAGAAGACCAGATCAGAGA
ACTAGAACTGAAAGTCCAGGAGCTTCGGAAGTATAAGGAAAATGAGAAGGACACCGAGGT
GTTAATGTCAGCCCTCTCAGCCATGCAGGATAAAACACAGCACCTGGAGAACAGCCTGAG
CGCAGAGACACGAATCAAGCTGGACCTGTTCTCTGCACTGGGGGACGCAAAGCGACAGCT
GGAGATTGCCCAAGGACAAATTCTTCAGAAGGACCAGGAAATCAAGGACCTCAAACAGAA
GATAGCCGAAGTCATGGCCGTCATGCCCAGCATAACGTACAGTGCTGCCACCAGCCCCCT
GAGCCCTGTTTCCCCCCACTACTCTTCCAAATTTGTGGAGACCAGCCCCTCTGGACTTGA
TCCCAATGCCTCTGTTTACCAGCCCCTGAAGAAATGAAGGCCAGCAGTGTGTTTTGTCCA
ACCATTGGGTTTTCAGAAGGCATCTCAAAGGAGCGTCTCTGGCAGTCAAGATAAAAAAAG
TTTATATTGTATTTTGTGGGACTGTATATGTTGTCGTTTTTTAAAAGGGGGGAAAGATAA
CATCCAAGTCCGATTAGAACTGCCCATCAGTTTTTCTTGTAAATTTTTAGAAGACCTCAC
AGAACTTGGCAGTTTATTTTTTTCGGCCAATACATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10439560|dbj|BAB15518.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10439560|dbj|BAB15518.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-415, + strand, RNAz p=0.815908

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-415, + strand, RNAz p=0.815908

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               257-439, gnl|bosTau2|chr2 (80301209-80301391)
               

               
               257-439, gnl|Mm7|chr4 (134189754-134189572)
               


               
               733-1176, gnl|bosTau2|chr2 (80314978-80315425)
               

               
               733-1176, gnl|Mm7|chr4 (134183003-134182569)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               257-439, gnl|bosTau2|chr2 (80301209-80301391)
               

               
               257-439, gnl|Mm7|chr4 (134189754-134189572)
               


               
               733-1176, gnl|bosTau2|chr2 (80314978-80315425)
               

               
               733-1176, gnl|Mm7|chr4 (134183003-134182569)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               ldo (0.0970026)

	257-439, gnl\|bosTau2\|chr2 (80301209-80301391)
	257-439, gnl\|Mm7\|chr4 (134189754-134189572)

	733-1176, gnl\|bosTau2\|chr2 (80314978-80315425)
	733-1176, gnl\|Mm7\|chr4 (134183003-134182569)